Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2405 |
Symbol | |
ID | 6116679 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2946667 |
End bp | 2950566 |
Gene Length | 3900 bp |
Protein Length | 1299 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641633913 |
Product | molydopterin dinucleotide-binding region |
Protein accession | YP_001760778 |
Protein GI | 170726752 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.598133 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.00155962 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTTATG TAGTAACTGG GGCGTGTATA GGTGATAAAC ATACCAGTTG TGTTGATGTG TGTCCGGTGA ATGCTTTTCG CGAAGGCGAA GAGATGTTGT ATATCGATCC GGATGAATGC ATTAGTTGTA ATGCCTGTTT AACGGAGTGC CCCTCATTAG CCATTTTTCC TGAAGCGTCA GTTCCAGAAG ATCAATTGCA GTATATAAAC ATTAATGCCA TTGAATCCAA AAAGCACCCA GTCATTACAG AACGAATTAA TAAGCAGCCA GTTAAAGAAA CGGATGTTTT TCAGTCCAAT AAACGATTTG CAGTAATCGG CTCAGGGCCA TCAGGTTTTT TTGCCAGTGA AGCGCTACTA AAACAATACC CGGGCGGCAA TATCGATATC ATTGAAAAGC TGCCAGTGCC TTTTGGTCTA GTGCGATTCG GTGTGGCACC AGATCACCCC AAAATAAAAT CCGTATCTAA AAACTTTACT AACCTAATGA AAGACCAGCC GTCTCTTAAA TTTTTTGGCA ATGTCGAGGT GGGTAAAGAT CTAGATCGTG ATTATTTATT GAATAGCTAT GATGCCGTTA TCTATACCAC GGGTGGGTCA AGTAGCAAAA CATTGAACAT TCCTGGTAAC GAGTTATCGG GAGTCTATGG TTCAGCGGAA TTTGTCGGTT GGTATAATGG CCATCCTGAG CAAAAGACCT TAGCACCTAA CCTGAATAGC TCAGTATTAT CCATCATCGG AATGGGCAAT GTTGCGCTGG ATATTGCGCG TACTGTTTGT CTGCCTCACG ATGAATTACA TCGTACAGAT GTTGCGCAGC ATGCGCTCGA TGATTTCTTA ACGAGTGACA TAACACACGT AAATATCATT GCCCGTAAGG GGCCAGCTCA AGCTGCGTTT ACGCCTAAAG AGCTACAGCA ATTAATCGAT CACCCTGATA TTAATATTGA AGTTGATGAG AATGAGCTGG TTTTAGATGA CGCTATGGAA GCCTCGCTTT CTTTGCCAGA GAATTCAGAG GCAAATGAAA ATATTCAATT ATTGCGCAGT ATTGCTACAC GTGAATCAAA TGGAAGTAAA ACCATACGCT TCATGTTTAA CCGCAACCCA GAAGAACTTA AAGGTCAGGA CGGAGCGGTT ACTCACCTGA AACTAGGTGT TAATCAGGTT TCATTGGACG GTGATGATCG CTTACAGGTT AACGCTACTG GTGAGACTGA ATGGCTAGAA ACCGGCGTTG TAGTCACCGC TACAGGCTAT AAAGGAACGG CCATTAAGGG CTTAGCGTTT GATGACTCAA AAGGTGTGAT TTCAAATGTA GATGGGCAAG CGAAATTAAG CAATGGGCAG CTGTCTGACA AAGAGTTTGT TGCGGGTTGG ATAAAGCGTG GTGCCAGTGG CGTCATTGGT ACCAATAAAT CATGTGCAGT TGGCACAGTG AATCAACTTG TTTCGATATT AGATCAAACA GATAGCATAT CTGAGCAAGC GTCATTACCA CCTCTAAAGA AATACTTAAG CGAGAAAGGC GTTAATTATT TTAGTGTCTC CGATTGGGCT GGACTCGATG CATATGAAAT TCAGCATGGT GAACGACTAG GGCGGACGAG ACAGAAACTG GTCGATCTAG CAGATATGGA GCAGGTTAAA AAAGACAATG CTAATTTAAT CGCCAAAGCG ACGCCCGAAT ACGACGAACC GATCGTCAAA GAATTCGATG CAAGTAAGCC AGTTAAAAAG CATCACCGTA CTTGTACTTT GTGCGAAGCC ATGTGCGGGA TTGTGGTTGA GTATCAAGGG GAAAAAATTG TCTCCATCTC TGGGGATGAG AAAGATCAGC ATAGCTTTGG ACATATTTGT CCGAAAGGTT ATGCCCTGCA GGATTTACAC AACGACCCTG ATCGAATAAA AACGCCCAAA AAGCGCATTG GTGATCAATG GGTCGACATG GATTGGGATG AAGCCTTAGA AGAAGTTGCC CAGCGATTAG TGGCTACCCA AGAAAAATAT GGTAACGATT CGGTAGCAGG ATATTGGGGA AATCCATCTT CACACAATAT TGAATGTAAC CTGACGGTTG GCCCGTTTCG TAAAGCCCTT AAATCAAAGA ACTATTACTC TGCCTCGAGC CTTGATCAAA TGCCTCACCA GTTAACGTCT TATTTGATGT ATGGGCATGG TATGAGCTTT ACTATTCCGG ATATTGATCG TACCGATTAT ATGTTAATGC TTGGCGCCAA TCCGGCCGCC TCTAACGGTA GCTTAATGAC GGCAGGTGAT GTACTGGCCC GTTTAGAAAA AATCAAAGAG CGTGGTGGCA AGCTGGTGTT GGTAGATCCA CGCAGGTCCG AAACCGCGTT ATACGCCAGT GAGCATCAAT TTATTAAGCC CGGTAGCGAT GCTCTGTTTT TGGTAGGCTT AATCAAGGTC ATCTTTGATA AAGGTTTGAC GAACATCGAT TCAAGATTGC CAATTAACGG TGATATCGAA GCCCTCGAGT CACTCTTTGA ATTCTTCTCG ATGGAAACCA TTTCGGAGTT GACCTGTATT CCCATAACTA AAATTGAACG TATCGCCACT GAATTTGCGA CCGCAGAGAA GGCGGTTTGT TATGGACGAA TGGGTATTTC TGTTCAAGAG TTTGGTGCAT TAAATCATTG GTTAATTCAA ATATTGAACA TTATCACCGG GAGTTTAGAT ACTGAAGGTG GCATGATGTT CACCACCCCG GCTATTGATT TGACTGACTT AGGAGGCCGT GGCAGCTTTA ACATGTATCG CAGCCGTGTT CGGAACTTAC CTGAAGTCAA TAAAGAGTTT CCAACAGCCA CTATGGCTGA TGAAATGCTG ACACCAGGAG AGGGGCAAAT TAAGGCATTT GTGGTGACTG CGGGTAACCC TGTTATATCC AGCCCTAATG GCGTTCGATT AGAAAATGCG TTAGCCAATT TAGATTTTAT GGTTGCCGTT GATTTCTATA TTAATGAAAC CACCAAACAT GCAGATATCA TTCTTCCCCC AAGCGGCCCG TTTGAGCATG CATTGTATGA TCTTATCTTC ACCAATTTTG CCGTTAGAAA TGTAAGTCGA TTCTCTGAAG CGTTATTCGA AAAGAAAAGC TATATGCGCT CTGAGTTCTC CATCTTTAAC ACCCTAACTC ATCGTATTGA AGAGCTAAAA TCCAGTAAGA AAGGACCTAT AGATCGGGTT AAATTAAAAG CTAAGCATAA GATTCAAGCG CTCATGACGG TAGAACGAGC TATCGATTTG ATGATTAGAA ATGGTCGCTA CGGGCATGGC ATGAAGAGCT ATATCACTGG CGGTGGCTTA ACCTTAAAAA AACTTAAAAC ACATCAACAC GGCCTGGACT TGGGGCCGCT TGAACCGAGA TTGCCAGGAA AGTTATTTAC TAAAGACAAG AAAATCAATC TGATACCTGA GGTGATGGCT GAGGATTTGA TACGTCTTAA CCAATATGTT GAAAGAGAAT CCACAAAGGC TGGGACGTTA ACGCTGATTA GCCGACGTGA TTTAAGAACC AATAACTCGT GGATGCATAA CAGTCAGCGC TTGGTCAAAG GCCAAAATCG CTGTGATTTA TTTGTTCATC CTGAAACAGC CAATGAATAC GGCATTAAAA CTGACGAACA GGTTCACATC ACCAGTGCGG TGGGTGCGTT AAAAGTCACC GTAGCCATTA CCGACGAGAT TATGCCTAAC GTGGTGAGCC TGCCCCATGG CTGGGGCCAC CATAGAAAAG GTATGAAAAT GTCAGTGGCT CAGTCCAGTC CCGGTGTGAG TGTGAATGAC ATAACAGATC ATAATTTTGT TGATGAACTG TCTGGAAATG CCGCCCTAAA TGGCGTGCCA GTGAGTATCC AGAAAATATT TAATCAATAA
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Protein sequence | MAYVVTGACI GDKHTSCVDV CPVNAFREGE EMLYIDPDEC ISCNACLTEC PSLAIFPEAS VPEDQLQYIN INAIESKKHP VITERINKQP VKETDVFQSN KRFAVIGSGP SGFFASEALL KQYPGGNIDI IEKLPVPFGL VRFGVAPDHP KIKSVSKNFT NLMKDQPSLK FFGNVEVGKD LDRDYLLNSY DAVIYTTGGS SSKTLNIPGN ELSGVYGSAE FVGWYNGHPE QKTLAPNLNS SVLSIIGMGN VALDIARTVC LPHDELHRTD VAQHALDDFL TSDITHVNII ARKGPAQAAF TPKELQQLID HPDINIEVDE NELVLDDAME ASLSLPENSE ANENIQLLRS IATRESNGSK TIRFMFNRNP EELKGQDGAV THLKLGVNQV SLDGDDRLQV NATGETEWLE TGVVVTATGY KGTAIKGLAF DDSKGVISNV DGQAKLSNGQ LSDKEFVAGW IKRGASGVIG TNKSCAVGTV NQLVSILDQT DSISEQASLP PLKKYLSEKG VNYFSVSDWA GLDAYEIQHG ERLGRTRQKL VDLADMEQVK KDNANLIAKA TPEYDEPIVK EFDASKPVKK HHRTCTLCEA MCGIVVEYQG EKIVSISGDE KDQHSFGHIC PKGYALQDLH NDPDRIKTPK KRIGDQWVDM DWDEALEEVA QRLVATQEKY GNDSVAGYWG NPSSHNIECN LTVGPFRKAL KSKNYYSASS LDQMPHQLTS YLMYGHGMSF TIPDIDRTDY MLMLGANPAA SNGSLMTAGD VLARLEKIKE RGGKLVLVDP RRSETALYAS EHQFIKPGSD ALFLVGLIKV IFDKGLTNID SRLPINGDIE ALESLFEFFS METISELTCI PITKIERIAT EFATAEKAVC YGRMGISVQE FGALNHWLIQ ILNIITGSLD TEGGMMFTTP AIDLTDLGGR GSFNMYRSRV RNLPEVNKEF PTATMADEML TPGEGQIKAF VVTAGNPVIS SPNGVRLENA LANLDFMVAV DFYINETTKH ADIILPPSGP FEHALYDLIF TNFAVRNVSR FSEALFEKKS YMRSEFSIFN TLTHRIEELK SSKKGPIDRV KLKAKHKIQA LMTVERAIDL MIRNGRYGHG MKSYITGGGL TLKKLKTHQH GLDLGPLEPR LPGKLFTKDK KINLIPEVMA EDLIRLNQYV ERESTKAGTL TLISRRDLRT NNSWMHNSQR LVKGQNRCDL FVHPETANEY GIKTDEQVHI TSAVGALKVT VAITDEIMPN VVSLPHGWGH HRKGMKMSVA QSSPGVSVND ITDHNFVDEL SGNAALNGVP VSIQKIFNQ
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