| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2194 |
|---|
| Symbol | |
|---|
| ID | 6116464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2686752 |
|---|
| End bp | 2688389 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641633702 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_001760571 |
|---|
| Protein GI | 170726545 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00216283 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATAGCTT TATTACGTCG CTTCACCATA CTTCAACGAT TGATATTAAT GCTTGTTCTT
GCTGCAATCG GTACGCTTTG TTTCGCCAGC TTTTCCATTA ATGAGCAACG TAATAATTTG
ATAAAGCAAA AGTGGGTGCA AAATGACGCC CAGTTAGTCA CAGTACTGAG TATTATTGAC
GCTCACCGAA AGCAGGTATC ACAGGGGAAA ATAACTCTTA AAGATGCAAA GGCTGAAGCC
ACTCAACTAA TCAATGAAAT TGGGTTTGGC AAAGATGGTT ACTTTATCCT TATCGATGAA
AACAGCAGTA TAATCTCCCA TGGTACCTCC CCTAACCTCA TCGGCCAACA CGCTAATAAG
ATCCACTCTC AAAACAGCCA ACTCTCCCTT GCAGATATGG TCAGTGAAGC ACAAACAGCG
ACGGTATCAA AACAAACATT TTTCATTGTT AACCCTCAGA CCAGAGCTAT TGAGGAGAAA
TTAGTAGAAG CAAGATATTA CCCTGCCTGG GACTGGACCT TAGTGACAGG CTCTTACATG
AGTGATATTA ATGAAGCAAC CTATGAGGTC GTACTAAATT ACCTCATTAT CATGGTACTG
ATTTCGGCGC CCATCTTTGG TTTTTTCCTC ATACTTAACC ATTCCATCAG CGTTCCACTG
AAAGAAGCGA TAGCGGCGAT GGAAGATATT GCCAAAGGTG AAGGTGATCT CACTAAACGC
TTACCCACAG TAGGCAAAGA TGAAGTGGTC GATCTTGCCA TCGCTTTTAA CCTTTTTGTT
GAAAAAATCA ACTTAATGGT CGGCCACCTC AAACCATTAG GTGACAGTTT AAATCAAGAT
GCCAACCGAC TCCTCACCGC TGTTGAAGAG TCAAATGCCT GTGTTGACCA TCTGCATCAA
GAGACAAGCA GCGTAGCAAC AGCCATCAAT GAGATGCTAT CTACGACTCA TGAGATGGCA
AGCAATACTC AGCAAGCAGC CGATGCAGCC AATGGAGTTC AAACCCAGGC TCAACAAAGT
AAATCGATGA TGGATCAAAC GTTAATCCAT ACAGAAAAGT TAGTAGACGA ACTCAAAAAC
TCTGAGGTAA TCACTCACAA TTTGGGCCAA TCCTCTGATC AGATAGGCAG TATATTAGAT
GTCATACGTG GCATTGCAGA GCAGACTAAC CTGCTCGCAC TTAACGCTGC CATTGAAGCG
GCAAGAGCTG GCGCCCATGG TCGCGGTTTT GCCGTGGTTG CCGATGAGGT CCGTGCATTA
GCGACTCGCA CACAGGAGTC GACTAATGAG ATCCAAAAGA TCATCTCAGA TATCCAATCA
GGTGTCGCCT CGGTGATGAC CAGTAACTCA GATACACAAA GCAGATCTGT ACAGCTTCAA
AACCAAACAA AAGAGGTAGG TAGCTCACTC GAGGACATTC TAGGTTTAAT TGCTCATATC
AGTGATATGA ATACCCAGCT TGCCAGTGCC ACTGAGGAGC AATCATTAGT CACAGAGGAG
ATAAATCGAA ACGTCTGTAG CATCACTGAG CTAACAGAGG TTAGCGTTAA AGCCAATGAG
AGCAATAAGT CTGCGGCTAT CTCTTTGCAA GATCTAAGTG AGGACACTGC CAAGACTTTA
GCTCAATTTA AAGTTTAA
|
|---|
| Protein sequence | MIALLRRFTI LQRLILMLVL AAIGTLCFAS FSINEQRNNL IKQKWVQNDA QLVTVLSIID
AHRKQVSQGK ITLKDAKAEA TQLINEIGFG KDGYFILIDE NSSIISHGTS PNLIGQHANK
IHSQNSQLSL ADMVSEAQTA TVSKQTFFIV NPQTRAIEEK LVEARYYPAW DWTLVTGSYM
SDINEATYEV VLNYLIIMVL ISAPIFGFFL ILNHSISVPL KEAIAAMEDI AKGEGDLTKR
LPTVGKDEVV DLAIAFNLFV EKINLMVGHL KPLGDSLNQD ANRLLTAVEE SNACVDHLHQ
ETSSVATAIN EMLSTTHEMA SNTQQAADAA NGVQTQAQQS KSMMDQTLIH TEKLVDELKN
SEVITHNLGQ SSDQIGSILD VIRGIAEQTN LLALNAAIEA ARAGAHGRGF AVVADEVRAL
ATRTQESTNE IQKIISDIQS GVASVMTSNS DTQSRSVQLQ NQTKEVGSSL EDILGLIAHI
SDMNTQLASA TEEQSLVTEE INRNVCSITE LTEVSVKANE SNKSAAISLQ DLSEDTAKTL
AQFKV
|
|---|
| |