| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2176 |
|---|
| Symbol | |
|---|
| ID | 6116446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 2668564 |
|---|
| End bp | 2669103 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641633684 |
|---|
| Product | amino acid-binding ACT domain-containing protein |
|---|
| Protein accession | YP_001760553 |
|---|
| Protein GI | 170726527 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2716] Glycine cleavage system regulatory protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00808907 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.900227 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACC ATCTTGTTGT TACTGCTATG GGAGCTGACC GCCCAGGAAT TGTCAGTAAA
TTTGCAAGAC TTGCAAGTGA ATGTGACTGC GATATTGTCG ACAGTCGAAT GGCTTTATTT
GGCAATGAGT TCACTTTAAT CATGATGCTT TCAGGCTCTT GGGCCTCCAT CACTAAGATG
GAGTCTACCC TACCCGGTTT GAGTGTTGAA CTTGAGCTAA TGACAGTAAT GAAACGCACC
TCTAAGCATA CGGCTCAACA TTATGTCTCT CGTCTTGAGG TGACCTTTAA TGGTAAAGAT
CAGCGCGGCA CGATGAGAAA GATAACTCAG TTTCTTGCAG AACGCTCACT GGATCTTGCC
GCAGTAAGAT CTCATGCCGA AGAGGATGAA AATGGCAATC CAACTCAAGC GGTTTTTTTA
ACCATCAATG TGCCTGAAAA GGTTGAGTTA GAAAAGTTGG AGATCAGCAT CAATGAACTC
GCTCAAGAGA TGTCATTAGA TTGCACCATC GAACGTATGC GTGAGTTAAC AACAGCATAA
|
|---|
| Protein sequence | MSNHLVVTAM GADRPGIVSK FARLASECDC DIVDSRMALF GNEFTLIMML SGSWASITKM
ESTLPGLSVE LELMTVMKRT SKHTAQHYVS RLEVTFNGKD QRGTMRKITQ FLAERSLDLA
AVRSHAEEDE NGNPTQAVFL TINVPEKVEL EKLEISINEL AQEMSLDCTI ERMRELTTA
|
|---|
| |