Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1901 |
Symbol | |
ID | 6116164 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 2340663 |
End bp | 2341874 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641633404 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001760280 |
Protein GI | 170726254 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.164629 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGA CTGTTAACTC AATAGCAAGG AAGACATGGA TTAAAAGCTT TGTACTCTCT TCGCTTACAT TATCCTCAGC CTCTATGTTG TCGGCCTGCA ATCATGAATC TGTGACCAGG GTAGAGCAAG GTGTCCTAAG TCAAAGTATC GAAGCATCCG GTGAGCTTGT TTCGGCTGAT ACCGTTTCAT TAATGCCGCC TTCAATTCGC CGTGTGTGGC AGTATCAAGT TAAGCAGTTA GCTCAAGAGG GAGCAGAGGT TCAGCAGGGT GATATGGTTG CTCAACTCGA CACCTCTGCC TTGACGCAAA AGCTCTCAGT TAAAACAGCC AAGTTAGAAG CGACTCTTCA AGATATTGAA ACTTCCAAGT TAAGGAATGC AAAAAAACTT GAGGAGCTGA GACTGGGACT CGCGGAAGAC AAGATGAACC TTGAGAAAGC GGAGCGTAAA TTTAGGCTGT CAGATGAAAC CGTAGCTGCC ATTGAAAAGT TTAAATATCA AAAAGATGCA GAAATAGCCC GAGATAAGGT GAACTTAACA GAGCAGAAGC TGGTTTTAGA AGTGAAAGGG GCTAAACAGA GGGAGGCGAT GTTGATGGGG GACCGTCAGA AATTTGCTGC TGAAGTTGAG CAACTTAAAC GTGGAATACA ATCCTTAACG CTTATCGCCC CGCGAAGTGG AATGGTGGTT TATTGCAATG ACTCTCAAGG TAATAAGATA AAAGAGGGTC AGTCAGTATT TATGGGGGAT GCGGTGCTAA GTATTCCAGA TCTGACCCAT ATGCAGGTCA ATATGACGAT CCCGGAGGTT GAGGCGAGAC GGGTTAAGAT AGGTCAAGAG CTTAAGATTA GACTTGATGC GAACCCTGAT AAGGTTTTTA CCGGTAATAT TATTGAACTC GGCGCTGTAT TTCGCAATAA AAACCAAGAG GTTCCTTTAG TTGTTTTTGA TGCTGTTGCC AGCATAGATG AAGCGGATAC TGAGTTGATG CGCCCAGGTA TGACCGCCAA AATATCGATT GATATTGCCA ATGAAAAGCA GGAGTTACTT CTCTCTCTCG ATGCTGTTCA TTACGACGCT GGACAGGCAT ATGTGTTTAC TCCTGATACT TTTAGTAACA GTAAACAGGC TGTCACTATA GGTGCGATAG GTAAAGAGCG AGTGTCTATC ACATCAGGAT TAGCATTAGG TCAGGAGGTT GTACTGCCAT GA
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Protein sequence | MKKTVNSIAR KTWIKSFVLS SLTLSSASML SACNHESVTR VEQGVLSQSI EASGELVSAD TVSLMPPSIR RVWQYQVKQL AQEGAEVQQG DMVAQLDTSA LTQKLSVKTA KLEATLQDIE TSKLRNAKKL EELRLGLAED KMNLEKAERK FRLSDETVAA IEKFKYQKDA EIARDKVNLT EQKLVLEVKG AKQREAMLMG DRQKFAAEVE QLKRGIQSLT LIAPRSGMVV YCNDSQGNKI KEGQSVFMGD AVLSIPDLTH MQVNMTIPEV EARRVKIGQE LKIRLDANPD KVFTGNIIEL GAVFRNKNQE VPLVVFDAVA SIDEADTELM RPGMTAKISI DIANEKQELL LSLDAVHYDA GQAYVFTPDT FSNSKQAVTI GAIGKERVSI TSGLALGQEV VLP
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