| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_1547 |
|---|
| Symbol | |
|---|
| ID | 6115787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | + |
|---|
| Start bp | 1925360 |
|---|
| End bp | 1926547 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641633031 |
|---|
| Product | outer membrane protein assembly complex subunit YfgL |
|---|
| Protein accession | YP_001759930 |
|---|
| Protein GI | 170725904 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | [TIGR03300] outer membrane assembly lipoprotein YfgL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00611389 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCTT GGTGCAAAAC ATTGCTCGCA TGTGGATTGA GCTTAGGTCT GTTATCAGCC
TGTTCATCCA GTGACGTAGA AGAGGAGCCG GTGAGCCCTT TGCCTGAAAT CGAGGCAAGT
GTCTTTCCAA CAGTAAGCTG GAGTGCTTCG GTTGGTAATG GTGTGGGACC TTATTACTCC
CGCCTACGCC CAGCTGCACG ATATGACAAA CTGTATGTTG CCGATCGTTA CGGTCAGGTG
GTTGCATTTG ATGAAGCCAC TGGTGAAAGA GCGTGGGAGA GAGACTTCAG CTCAGCTTTT
AAAGATAATA TCTTAGCCAA AAATAAAGGG GCTAAACTTG CAGCTGGCGT TACCGCTGCT
CGCGACAAGG TCTTTATCGG TGGCGAAAGT GGTCTACTTG GTGCACTCGA TGCTGAAACC
GGTGAAACCG AATGGTCGGT TGTTACTGGT GGTGAGCTAT TATCTGCGCC AACTGTTGCC
GAAGATATTG TTGTGGTCAA TACCAGTGCT GGAACGCTCG AGGCATACAG CGTTGAAGAT
GGTGAGCAGC AGTGGATCTA TGAGTCAAAG CTGCCAACAT TAACCTTACG CGGTACAGGT
TCTGCAAACT ATGAAGCGGG TGGTTTCTTT GTGGGAACTG CCGATGGTAA AATAGCCGTT
GTGATTAAGA ACAATGGTCA GGCTGCATGG GAGCAAGCGA TTTATACGCC AAAAGGCGGT
AATGAGTTTA CCCGTATGGC CGATGTCGAT ATGATGCCGC TCATTATTGG TGAAAACCTA
TACGCAGTGA GTTTTAACGG TAATCTCGTA TCGATGGAGC TAAGATCTGG TCGTGTTGTC
TGGACCCGTA AATATTCAAG TTTCCATGAG TTAGCCGATT CGGGTGTTAA CCTGTTTTTG
GTTGACGATC ATAGTCGCAT CTACGCAGTA GATAGACGTA ATGGTCTGGA GAACTGGAGC
AATACTGAGC TGGCAAATCG TGACTTAACG TCTGCAGCCG TGTTCAAAGA CTACATCGTA
GTGGGTGATT TTGAAGGGTA CCTTCACTTT ATCGACAAGA GTAATGGTAA TATTGTTGGC
CGTGTAGAGG TCGACAGTTC AGGCTTATTT AGCCAACCTC TGGTTGTAGG TGATAACATA
TACGTTCAAA CACGAAATGG TAAAGTTGCT AGAATAACGC TCCCATAA
|
|---|
| Protein sequence | MKSWCKTLLA CGLSLGLLSA CSSSDVEEEP VSPLPEIEAS VFPTVSWSAS VGNGVGPYYS
RLRPAARYDK LYVADRYGQV VAFDEATGER AWERDFSSAF KDNILAKNKG AKLAAGVTAA
RDKVFIGGES GLLGALDAET GETEWSVVTG GELLSAPTVA EDIVVVNTSA GTLEAYSVED
GEQQWIYESK LPTLTLRGTG SANYEAGGFF VGTADGKIAV VIKNNGQAAW EQAIYTPKGG
NEFTRMADVD MMPLIIGENL YAVSFNGNLV SMELRSGRVV WTRKYSSFHE LADSGVNLFL
VDDHSRIYAV DRRNGLENWS NTELANRDLT SAAVFKDYIV VGDFEGYLHF IDKSNGNIVG
RVEVDSSGLF SQPLVVGDNI YVQTRNGKVA RITLP
|
|---|
| |