Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_1542 |
Symbol | |
ID | 6115782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 1920262 |
End bp | 1921050 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641633026 |
Product | type IV pilus biogenesis/stability protein PilW |
Protein accession | YP_001759925 |
Protein GI | 170725899 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.364125 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCACG GACTGCCCCA AAAAATCGCA CTTACCATAC TTCTTTCGAG TATGTTGAGT GCCTGCGTGT CACAAAGTAC TTATACTGGA ACCGACGTTC CTGTGACCGA AAGGGAGTTC GACAATGTCT TGGCCGCGCA GAAGCGTGCA CAACTCGGGT TAACCTACCT GCGCAAAGGT AACAGCCAGC AAGCTAAGTA CAATTTAGAT AAAGCTGTTG AGTTTGCCCC GAATATTCAA GATGTACACA TATCAATGGC TTACTACTAT CAAACAGTCG GTGAGCTTGA AAATGCCGAA GACTCCTACC GTAAAGCCAT TAATGCGAGA GACGCCAGTG GCGACGGGTT AAACAATTTC GGTGTGTTTC TTTGTCAACA AGAGAAATAC AAAGAGTCTG AGAAGATGTT CCTTAGAGCG GTCAAAATGC CCAGTTATAC TCGCTCAGGG GACAGCTATG AAAATTTAGG GATCTGTAGT CGTAAGGCTG GAGAGATAGA GAAAGCGCGT AAATACTTCA GTACCGCACT TAGATACAAT CCCAGAAGTG GAAGCACTCT ACTTGAATTA ACAGAGATCG AGATTGAGGA ACATAACTAT CTCGATGCAC GTGCGCAACT TGCACGCTAC CATCGTGTCA TCGCCCAATC TGCCGAAAGT TTGACCTTAG GAGTTGAGAT TGAGCGGGGC TTAAACGATG AAGAGGCCGC CAGAGAGTTT GGCATATTAC TTTTAGCTAA GTTTCCCTCA TCTATTGAGG CTAAGCGATA TCGAGCCAGT ATGCACTGA
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Protein sequence | MKHGLPQKIA LTILLSSMLS ACVSQSTYTG TDVPVTEREF DNVLAAQKRA QLGLTYLRKG NSQQAKYNLD KAVEFAPNIQ DVHISMAYYY QTVGELENAE DSYRKAINAR DASGDGLNNF GVFLCQQEKY KESEKMFLRA VKMPSYTRSG DSYENLGICS RKAGEIEKAR KYFSTALRYN PRSGSTLLEL TEIEIEEHNY LDARAQLARY HRVIAQSAES LTLGVEIERG LNDEEAAREF GILLLAKFPS SIEAKRYRAS MH
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