| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_0135 |
|---|
| Symbol | |
|---|
| ID | 6114358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella woodyi ATCC 51908 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010506 |
|---|
| Strand | - |
|---|
| Start bp | 165419 |
|---|
| End bp | 166594 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 641631616 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001758531 |
|---|
| Protein GI | 170724505 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0106255 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTTAA TGACAATCTT GTTGCTTATC TCTGTTGGAA TGAGTTTCTT TATGATGGGA
TATGCGGCCA CCACGCCCCA TCAAAATGCC AAGGCGCGAC TCTGCTTTTC ACTGATGTTG
GTGGGCTTGA TAAGCTTGAT GATCGAACTG GCAATTTTTG AGGAGGGAGG GAGTTTTCTC
TACATCATCT CAATCTCTGG CCCTCTATCT GTCTCGGTTC CTATCTTTTT CTATCTCTAT
TTCAAAGCCA GTGTTGGTTT AAGTGATGAG TTTCAATGGA GAAATGCTAG ACACCTAGTA
ATTCCATTTA TCTATCTCGC TATCATGATG CCCTATAACC TTTTGGATGA AGTAGGTAAG
AGCCACTTTT TCTCACAGGT TTATGCCAAA GAGGTGATAT CTTGGCCGCT GTCAATGACG
CCTATCCGCT TCTCTCGTCT GCTCATTATC AGTAGCTTAG GCTTGTTCTA CCTCTACCTA
AGCTGGCGAG AACTGCATAT AGAACTCAAC AATAAGAAGC AAGATGTACT CAGAGAGATG
AACAAACTCA AGGGTGCATT TCTAGGAATA AGCCTCAGCT TTATCGTGAT TTTTCTCTTC
TTTCTATTTC GGCTACCACA CCAATTTACC TGGATGATTT CATCCATACT CCTGGTGATA
ACAGCAATCA GCTGCATGAT CTTTTACTAC CTGCCAGTGC TGGGGAAGAA GCTCATATCA
GATGCCGACC TGCATCAGCT GTTACCCCCA AAAGCACAAG AGCTCCAACA AGAGGTAGGC
CAAACAAGCC CAGAAGCTGA TACACCGGAT AGACAATACC GCTCATCGGT GACCAATGAT
TTGGCAAAAG AGGTGATCCA TCACCTTAAT ATATTGATGG AGGGGGGGAT CTATAAAGAT
TCAACCCTAT CATTGGGCAA ACTAGCCTCA CAGCTTAAGC TCAGTACCCA CCACTTGTCT
CAGATCATCA ACCAACAAAC TCAAGGAAAC TACTTCGATC TGATCAACCA ATATCGAATT
AAAGATGCCC AACATCTGCT CATCAATACA AATATGAGCA TCATAGATAT CGCCTACGAG
GTGGGTTATA ACAGCAAGTC CTCCTTCTAT ACTGAATTTA AACGCCGAAC CCAGATGACA
CCAAACCAAT TTAAGAAGTC TAACAAGGAG CCATAA
|
|---|
| Protein sequence | MQLMTILLLI SVGMSFFMMG YAATTPHQNA KARLCFSLML VGLISLMIEL AIFEEGGSFL
YIISISGPLS VSVPIFFYLY FKASVGLSDE FQWRNARHLV IPFIYLAIMM PYNLLDEVGK
SHFFSQVYAK EVISWPLSMT PIRFSRLLII SSLGLFYLYL SWRELHIELN NKKQDVLREM
NKLKGAFLGI SLSFIVIFLF FLFRLPHQFT WMISSILLVI TAISCMIFYY LPVLGKKLIS
DADLHQLLPP KAQELQQEVG QTSPEADTPD RQYRSSVTND LAKEVIHHLN ILMEGGIYKD
STLSLGKLAS QLKLSTHHLS QIINQQTQGN YFDLINQYRI KDAQHLLINT NMSIIDIAYE
VGYNSKSSFY TEFKRRTQMT PNQFKKSNKE P
|
|---|
| |