Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_0039 |
Symbol | |
ID | 6114256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 43301 |
End bp | 44410 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641631514 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001758435 |
Protein GI | 170724409 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.357546 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAACC CCATGAAACG ACTAATTTTA TTCGCTTTAA TGACATTTAG TTGCTCTATA TTCGCAGATA CCCTCACTTT GAAGTCCGGT CATCCAGATT CCTATGTTGT TGTGAAGGGA GACACACTCT GGGATATCTC TGAACATTTT CTTAATGACC CTTGGCGCTG GCCTAAGTTA TGGGGCGTTA ATCCTCAAAT TGCGAACCCT CACCTCATCT ATCCAGGTGA TCGGCTGACT TTAGTTTTCA TTGATGGCGA ACCTAGATTA GTCGTTAAGC CCCATAAGCG TAAGAGCCCT GAAGGCAGAA TTCATGCTAA GGGCGATGCG ATACCAGCGA TTGATCTTTC GTTAATTGGT CCCTACTTAA TTCAAAATCG TGTTGTCGAT GGTGATTGGT TTGATAAACA ACCTATGGTG CTGGGTGGGG AGAGCGAATC TAAACATCAT ATCGTTGGCG ATATTGTTTA TGTACAACAA GTTCTGACCT TAGGTGATAA GTTTGGTGTT TATTCTGAAG GTCGTGAGTT TGTCAGTAAA GAGAATGAAG TGCTTGGGAA AGAGGTGGTT TTAACTGCCA GTGGACGTGT GGTTGAGTCT GGCCCTATCT CTAAGATTAA GCTACTGAGC AACTTTCGTG AAACTAAAGC GGGATACCGT ATTTTACCCA TCGAGAGTGA TTCACTGCTC TCCGCTTACT TTATGCCCAA AGCTGCGACA GTGACTGAGC CTGGCTCAAT CCTCGCCTCT GAAAAGCACC TAAGAGAGAT GGGTAAACTG GATGTGGTCT ATCTTGATAA AGGGGTAGAG GATGGGGTTG AACCTGGTGA TGTTTTCTCA ATCTATCGAG ATGGCATCGA TGTGGTGATA AATGGTGATG GACAGCCTGT ACTGCCTGCA GAAAGAAGTA GTTATGAAGA TCTGCTAAGT GGTGTTTCCT CCGATAATGC CATTAAGATG CCTGATATCT TCCGTGGTCG ATTAATGGTG TTTAAAGTTT TTGATAAGAC CAGCCTTGGT CTTATCATGG CGAATAAGAA AACTGTCCGG GTCGATGATA AGTTGGTCCA GCCAGATTCG ATAAACCTAT TAAAAAGTTT TGCTGATTAA
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Protein sequence | MENPMKRLIL FALMTFSCSI FADTLTLKSG HPDSYVVVKG DTLWDISEHF LNDPWRWPKL WGVNPQIANP HLIYPGDRLT LVFIDGEPRL VVKPHKRKSP EGRIHAKGDA IPAIDLSLIG PYLIQNRVVD GDWFDKQPMV LGGESESKHH IVGDIVYVQQ VLTLGDKFGV YSEGREFVSK ENEVLGKEVV LTASGRVVES GPISKIKLLS NFRETKAGYR ILPIESDSLL SAYFMPKAAT VTEPGSILAS EKHLREMGKL DVVYLDKGVE DGVEPGDVFS IYRDGIDVVI NGDGQPVLPA ERSSYEDLLS GVSSDNAIKM PDIFRGRLMV FKVFDKTSLG LIMANKKTVR VDDKLVQPDS INLLKSFAD
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