| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5378 |
|---|
| Symbol | |
|---|
| ID | 5195608 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | + |
|---|
| Start bp | 283528 |
|---|
| End bp | 284271 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640579305 |
|---|
| Product | Type-F conjugative transfer system pilin assembly protein TrbC |
|---|
| Protein accession | YP_001260253 |
|---|
| Protein GI | 148550814 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02742] type-F conjugative transfer system pilin assembly protein TrbC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 42 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.890308 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTCG CTGCCTGGGG CGTTGCTGCC CTGCTTGCTA CCGCCGGTGT ATCGGCGCTG
CTCGCCCAGA CCGTTGACGG TCTCGACGTG CAGGCCATCA AAAAGCGCTC GGCCGACCTT
GCCGCGGATG CCGAAGCCTT CGTGAACCAC GTCAAGGATC GCGGCGACCA GTTCCGCGAG
GAGGCCGTCG CGGTGCGCGA AGCCGGCACT GAAAACATGC GACAGGTCGC GGCCAAGGAT
CTGCCCAAGG GGCCCGACGG CGCGATCGAC TTCGATGAGA TCGTGCAAGG CGCCGCCGGT
AATGCCAGCG TCAAGAGTGG CGAGGCGCCG CAATTCATCG TCTTTGCCAG CCTCTCGATG
CCGCCGCAGT CCCTGAAGCC GCTTATCCGC GATACGGCGC GCGCGGGCGG CGTCGTGGTG
TTCCGCGGCT TTCCGAACAA CAGCATGAAG GAGTTTGCGA CCCGGCTCGG GCAGATCGTC
GAGCGCCAGG ACGAATTCGC CAATGTCGGC ATCGATCCGC GACTGTTCCG AGCCTTCAAT
GTGCAGGCGG TCCCGACCTA TGTTGCCGTG TCGTCCGATT TCGACCTGTG CGCCGGCTTT
TCCTGCCAGA CAAAGGTGCC GCCCTATGAC CGCATGACGG GCAATGTCAC CGTGGAATAT
GCGCTCAGCA GCTTTGCCGA CGGCTATGGT CCGGGCGCCC GGGTCGCCGC CGTTGGCCTC
TCAAATATGC GGATGCAGCG CTGA
|
|---|
| Protein sequence | MRFAAWGVAA LLATAGVSAL LAQTVDGLDV QAIKKRSADL AADAEAFVNH VKDRGDQFRE
EAVAVREAGT ENMRQVAAKD LPKGPDGAID FDEIVQGAAG NASVKSGEAP QFIVFASLSM
PPQSLKPLIR DTARAGGVVV FRGFPNNSMK EFATRLGQIV ERQDEFANVG IDPRLFRAFN
VQAVPTYVAV SSDFDLCAGF SCQTKVPPYD RMTGNVTVEY ALSSFADGYG PGARVAAVGL
SNMRMQR
|
|---|
| |