Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_5371 |
Symbol | |
ID | 5195829 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009507 |
Strand | + |
Start bp | 277418 |
End bp | 280012 |
Gene Length | 2595 bp |
Protein Length | 864 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640579298 |
Product | Type-IV secretion system protein TraC |
Protein accession | YP_001260246 |
Protein GI | 148550807 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family [TIGR02746] type-IV secretion system protein TraC |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.622531 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAAAG GCGGCTTTTT CGACAGCATG CTTTCGGGGC TCTTCGGCGA TGCCGCGCGC CCTGATGATG ACCGGCCCGC GCTTGGCGTT CCCATGCTGG CGCACTGGCT GCCCTATCGC AGCTACGATC CCAAGACGGG GATCTTCTAC AACAGCGCCT CGCGCGGATT CGTGATCGAG GCCGCTCCGA TGGTGGGCGC GGACGAGCGC ACCGCGGAGA TCATCACGCA GTTCCTGTCC GAAGGCATTC CCGCGCCGGG CTGCATCCAG TTCCATCAGT GGATGAGCCC GCGCGTGGGG GAGGCGCTGA GCAAATGGTA TCTGCCGCGC TATGCCGCAC GCGGCGTCTA CGAACGGATG GCCAAGCACC GGGTCGATTT CCTCAGCGAC GGCGTATGGC AGTCGCTCTC GAAGGACGCG CCCTTTTGCC TGCGCCATCA CCGCGTGGCG ATCTCCTATT CGACGCCCGA GAGCTCGTCG GTGTCCGATG ACGACATCGT CTCGGTCATG GAGGGGCTCG TCTCCGCGCT GGCTTCGGTG GGGATCACGA CCCGGCGCAT GGATCCGGTC GCGCTGATCG CCTGGATCGA CGACATCACT TCACCGACCA CGGCTGCCGG TGAGGACGTC GTCAGCTACA ATCCCTTCGA TCCAATCGCC GACCAGGCCA TTCGCCGCGA CATCGAGCTC CGGGTCGAAC CCGACCGGAT GCTGCTGCGC ACCGAGCGGT TCCGACCGAC CGGCAAGGTC CACGAAGGCG CCCCGGAGAT CGGCGAGATC TATCCCGATG TCTTTGACGT GCGCTCCTTC TCGGTGCGCA ACCTGCCCAA TCGCTGGGCG CCCTGGGACA TGGCGAAGCT GGTGGGCGAC ATGTTCACTG ACAAGCTGCG CATGCCGTGC CCGGTCGCGA CGAACCTGTG CGTTGAATAT CCGGACACCC AGGCCTCGTC GAACAAGGCG AGCTTCAAGT TCATGCGGAC GACGAGTCTC GCCGATTCCA AGTCCGCGCG TTTCCTGCCG CAGCTGCGCG ACCAGAGCCA GGAGTGGCGG TTCGTCAACG ACGAGATCCG GCAGGGCCGC AAACTTGTGC GGGTATTCTT TTCCGTCACC TCCTTCTCGC CCAAGGGACG CGGCGACGCC AACGAACGTG TGCTCAAATC CGTCTACCGC GCGGCGGGCT GGGACCTGCT CGACGACCGC TACCTGCAGG TGATGGGCCT GCTCTGCGCC ATGCCCATGA CGATGGCCAA CGGCCTGTCG CGCGATCTCG AGCGGATGAA GCGCATGCGC ACGCTGCTCA CCACCACCGC CGCCAATCTC GCGCCGCTGC AGGGCGAATA TCTAGGCGGC CATGTGCCGC ATCTCCTGAT GGTGGGACGG CGCGGCCAGC CCTTCTTCTG GTCACCCTTC GAAAACGCGG CGGGCAACCA TAATGTCGCG GTCTTCGGCA AATCGGGATC GGGCAAGTCG GTGGCCTTGC AGGAGCTGTG CGCCTCGCTG TGCGGCGCTG GCGCAAAGGT GGTCGTGATC GACGACGGGC GATCGTTCGA GCATTCGGCC AAATTGCAGG GCGGCGCCTT CGTCGAATTC ACCATGAGCT CGGGCTTCTG CCTTAATCCC TTCTCGATGA TCGACGAGGC CCAGGCGGCT GAGGACGAGG ACTATCTGCT CGACTGCATG GCGATGCTCA AGGCCATCGT GAACCAGATG TCGCGCCACA TCGACCGTCT CAACGATACC GAGCGCGGCC TCATCGATGG CGCGGTCAAC ACGGTGTGGG AGGCACACGG CCGAAGAGGA TCGATCGACC TTGTGATCGA GGCGCTCGAT GCAACCGGCA ACGCGCTCGC GCACGACCTC GGTATTGCGA TGCGCCCCTT CTCGGCGGCG GGCACCTATG GCCGGTTCTT CCAGGGGGAG GTCAGCTTCG AACTGAAGGC GCAGCTCACG GTCTTCGAGC TCTCGGATCT CTCCGCGCGC GAAGAACTGC GCAGCGTGGT CCTCACCGCC ATCATGTTCA TGTCGCAGCA GGTGATGCGC AAGGTCGATC GCGCAATCCC CAAGGCACTG CTGCTGGATG AAGCCTGGCA GCTGCTGCGC GGCGGGGCTA TGGCCGACTT CATCGAGACC TATGCGCGCA CCTGCCGCAA ATATGGCGCT TCGCTCGTCA CCGCCACGCA GTCGCTCAAC GATTATTACA AGTCGGCGGG TTCGATCGCG GCGCTGGAGA ACAGCGACTG GTTCGTCATC CTGCAGCAGA AGCCGGAAAC GATCGCCGAC TTCAAGAAGC ATGATCGCTT CGAGATGGAC GATTATACCG ATGCGCTGCT GCGCTCCTTG AAGCGTAACG GCTTCGAATA TTCGGACATC ATGATCAAGG GACCCGAGAC GCTGGCGGTT GGTCGCCTGG TTCTGGATCC CTATTCAGCC ACATTGTTTT CCTCGAGCCC GCAGACCTTC GCCCGGATCG AGGCGCTGAT CGGAGAGGGT CTCAGCATGG ACGAGGCGAT CGAGCGCATC GCCTTTCCCG ACAACCCCGA GAAATGGGCG GCGAACGCGG AGAGTGATCC CGACGTCGCA ATCGCCGCGG AGTAG
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Protein sequence | MAKGGFFDSM LSGLFGDAAR PDDDRPALGV PMLAHWLPYR SYDPKTGIFY NSASRGFVIE AAPMVGADER TAEIITQFLS EGIPAPGCIQ FHQWMSPRVG EALSKWYLPR YAARGVYERM AKHRVDFLSD GVWQSLSKDA PFCLRHHRVA ISYSTPESSS VSDDDIVSVM EGLVSALASV GITTRRMDPV ALIAWIDDIT SPTTAAGEDV VSYNPFDPIA DQAIRRDIEL RVEPDRMLLR TERFRPTGKV HEGAPEIGEI YPDVFDVRSF SVRNLPNRWA PWDMAKLVGD MFTDKLRMPC PVATNLCVEY PDTQASSNKA SFKFMRTTSL ADSKSARFLP QLRDQSQEWR FVNDEIRQGR KLVRVFFSVT SFSPKGRGDA NERVLKSVYR AAGWDLLDDR YLQVMGLLCA MPMTMANGLS RDLERMKRMR TLLTTTAANL APLQGEYLGG HVPHLLMVGR RGQPFFWSPF ENAAGNHNVA VFGKSGSGKS VALQELCASL CGAGAKVVVI DDGRSFEHSA KLQGGAFVEF TMSSGFCLNP FSMIDEAQAA EDEDYLLDCM AMLKAIVNQM SRHIDRLNDT ERGLIDGAVN TVWEAHGRRG SIDLVIEALD ATGNALAHDL GIAMRPFSAA GTYGRFFQGE VSFELKAQLT VFELSDLSAR EELRSVVLTA IMFMSQQVMR KVDRAIPKAL LLDEAWQLLR GGAMADFIET YARTCRKYGA SLVTATQSLN DYYKSAGSIA ALENSDWFVI LQQKPETIAD FKKHDRFEMD DYTDALLRSL KRNGFEYSDI MIKGPETLAV GRLVLDPYSA TLFSSSPQTF ARIEALIGEG LSMDEAIERI AFPDNPEKWA ANAESDPDVA IAAE
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