| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_5265 |
|---|
| Symbol | |
|---|
| ID | 5195670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009507 |
|---|
| Strand | - |
|---|
| Start bp | 156053 |
|---|
| End bp | 160291 |
|---|
| Gene Length | 4239 bp |
|---|
| Protein Length | 1412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640579192 |
|---|
| Product | putative methylase/helicase |
|---|
| Protein accession | YP_001260140 |
|---|
| Protein GI | 148550701 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.314208 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGATC TCTTCGCCGC CGCCGGCGCA TCCGACCGCC TTGCCGCCCA GGCCCTGCTT
CCCCTGCTGC GCAGGGGGGG CCCCATCACC CGCCGCCAGC TCAACGAAGC GATGACGAGC
GCCTTTGGCG GCAGCGACGC CGACGGCCGC TGGACGCAGC GCGACAGCTT CGAACTCCTG
GAGCATGCGA CCGTCCTCTA TCTGCGCGAG AGGCCCTATA CCCTCGAGAG CTTCGCCGAC
GTGACGCAGG CCCATGCGCT CGTCCAGCGC CTGCCGACCC AAACCGTGCG CAGCGAAGCG
CAGATCGCCT GGCAGCAATT CTCGACGCCC GCCGATATCG CGGCGCTCGC GGTGCTGCTC
GCCGACGTCG GGCCGCAGGA CGTGGTGCTC GAGCCCAGCG CGGGCAATGG CCTTCTCGTT
GCGCAGCTCG GAGATCATCG GTCGCTGCAA CTCAACGAAC TCGATCCCAC GCGGCGATCG
CGGCTGGCGG CCCTGTTCCC CGACGCCCTC ATCACCGGGC ATGACGGTGC CGCGATCGGG
TCGCTCATGG CCCACCAGGA ACGGCCGAGC GTCATCCTGA TGAACCCGCC CTTCTCGCGC
TCGCTGGGCC GCGGCGCTGA CGACCGGGCC GCTGTGCGGC ACCTCCAGGC GGCGCTGCGC
CACCTTGCAC CGGGTGGACG CCTGGTGGCG ATCATGCCCG ACTGGTTTGG CCCCAATGCG
CGCATGCGCG ACCATTTCGA AACCGTGCTG CGCGAGGCGA GCGTGCGGAC ATCGCTGCGG
CTCGAAAAAT GCTACACCAA GCATGGCACG AGCATCGCCG TGCGGCTCTT CGTCATCGAC
AAGGTCGCGG GAAACGCGCC GCCCGCCGTC ATCCAGCGCG CATCGGTCGA AGAACTGGCC
GCGGTCCTCA CCGTGCCGCC GCGTGCCGCG CCGCCCGTCG TGGCAGCGCC CGTCCGCGCG
GCGCCGGTGT CCGGCAAAGG CATCTCGCTC TTCCGCGCGG TCAAGAGCGC TCCGGTCAAG
CCGCGCGCCT ATTTCGCACC GGCGCGCAAC GACGTTCTCC CGGTCGATTA TGAACGCCTC
GAAGCCCCGG CACCGCTGCT GGAGCAGACC GGCGTCTATC TGCCCTATCG GCCGAGCCGC
ATCGTATTCG ACAAAGCAGG CGACCACCCA ACCGCACTCG TGGAATCCGT CGCGATGGGA
TCGATCGCCG CGCCCATCCC GCACTATGTG CCCCGCTTGC CCGAGCGCAC CGTGTCGGAA
CGCCTGCTCT CGGCCTCCCA GCTCGAAACC GTCGTCTATG CCGGCCATGC CTGGTCGCAG
ACGCTCCCGG GGCGCTTCAA GCCGGACAAG GAGGGCGTCG GGCTCGTCCT TGCCGAAGAC
GGCCGGACCT ATCGCAAGGG CTTCTTCCTG GGCGACGGCA CCGGGGCCGG CAAGGGCCGA
CAGGTAGCCG CCTGCATCCT CGACAACTGG CTGCAGGGGC GGCGGCGCAA CATCTGGGTC
ACCAAGAACG AGCCGCTGCT CGAAGATGCG CGGCGCGACT GGACCGCGCT CGGCGGCGTC
TCGGCCGATG TGCAACCGGT CGGCAACTGG AAGATCGACG AGCCCATCAC CCTCGAGCAA
GGCGTCCTGT TCGTCACCTA TCCGACCCTG CGCTCAGCGC GCGGCGATCA TAGCCGGCTC
AAGCAGATCC TCGACTGGGC GGGCGAGGAT TTCGAGGGCG TCATTTTCTT TGACGAAGCG
CACGAGATGG GCGGCGTCGC TGGCGGGGAG GGGGCCCTTG GCGCAAAGGC CGGCTCGCAG
CAGGGCATCT GCGGCGTGCT CCTCCAGAAC CATCTGCCCG GCGCGCGCGT CGGCTACGCT
TCGGCCACCG GCGCCTCGGA CATCAACAAT CTCGCCTATG CGGTCCGGCT CGGGCTCTGG
GGCCCGGAAA CCTCCTTCCC CGATCGCGAG CAGTTCATCT CCTCGATCCG GCAAGGCGGC
ATCGCCGCGA TGGAGCTGGT CGCCCGCGAT CTCAAGGCCA GCGGCCTCTA TCTCGCCCGC
GCCCTGAGCT TTGCCGGGGT CGAATATGAC ATATTGAAGC ACGAGCTGAC CCCGGCGCAG
ATCGAGATCT ACGACATTTA TGCCGATGCC TGGGCGATCA TCCATCGCAA CATGGAGGCC
GCCCTCGAGC TGACCGGCGT CGTCGACGGC CTCGAAGGCA ATACGCTCAA CAGCGGCGCC
AAGGCCTCGG CGCGCTCGCG CTTCGAGTCG ACCAAGCAGC GCTTCTTCGG ACAGGTGCTC
CTGTCGATGA AACTGCCGAC CGTGATCGCG GCGGCCGAGC AGCATCTCGC CGAAGGCAAG
TCGGTGGTCA TGCAGCTTGT CACCACAGCC GAGTCCATCC TCGACCGCCG CCTGGGCCAG
CTCGCGCCGG ATGAGCGCGC CGAACTCGAT ATCGACCTGA GCCCGCGCGA ATACGTCATC
GACTATCTCG AACGCGCCTT TCCGACCCGG CAAATGCGTG TCTTCACCGA CGACACCGGG
GCCGAGCGAT CGGTGCCGAT GGACGACGAG AACGGCAATC CGGTCTATAA TCCGCAAGCG
CTCGCGGCGC GCGCCAATCT CATCGAGCAG CTTTGCGCGC TGCCGCCGAT CACCTCCGCG
CTCGACGGGC TTCTCAATCA TTTCGGCCAT GACTATGTCG CCGAGATCAC GGGACGCACC
AAGCGGCTGA TCCAGGCGAG CGACGGGCGC CAGAAGCTCG AGACCCGCTC GACCCGAACC
AGCCAGGCCG AGGCCGCCGC CTTCATGGGC GGCCTCAAGC GCATCCTCAT CTTCAGCGAC
GCGGGCGGGA CTGGCCGCTC CTATCATGCG AGCCTCGATG CGGTGAACCA GGAGCAGCGG
GCCCATCTCC TGCTCGAACC CGGCTGGCGG GCCGACCGGG CGATCCAGGG TCTGGGGCGC
ACCCATCGCA CGCATCAGGC CTGCACGCCC CTGTTCCGGC CGGTAACCAC CGACTGCAAG
GGCGAGCTGC GCTTCACCAG CACCATCGCC CGGCGCCTCG ATACGCTGGG CGCGCTGACC
CGGGGGCAAC GCCAGACCGG AGGACAGAAT CTCTTCGACC CCGCCGACAA TCTGGAAAGC
AGCTACGCCT GCGCGGCGCT GACGAGCTGG TTCCACCTCC TGCACCTGGG CAAGCTCAAG
AGCACCACGC TCGCCGAGTT CGAGGAGCGC ACCGGCCTCG AGCTCACCGA CAAGGACGGC
GTGCTGAAAG ACGAGCTGCC GCCGATCCAG CGCTGGCTCA ACCGGTTGCT TGCGCTCCCG
ATCGGGCTGC AGAACCGGAT CTTCGAGGAG TTTCTCGCCC TCGTCGAAAC CCGGGTACAG
GCCGCGCGCG AAGCGGGTCG GCTCGACGTC GGCGTGGAAA CCATGCTCGT CGATACCGCG
ACGATCATCG ACGACACGAT CCTGCGCACC GATCCGGTCA GCGGCGCGAC CTCCCACCTC
CTCACTATCG AGGTAGCGCG CCGCAAGACG CCGGTCTCGC TCGAGCGCAT CCTGCGCATC
GCCGAAAGTC ATCCACGCCA CGCCTTCCTG CGCAACGCCA AGTCCGGCCT GGTCGCACTG
CAGGTGAAGG CCCGCGCCCA TATGGAAGAG AAGGACGGCA CGCCCATCCC CCGCATCGAA
CTCATGCGCC CGACCCGCAA CGACTATATG CGCCTTGCCG ATCTCGCCGA AACCGCCTGG
TCACCGATCG ACGAGGAAGC TTTCCGCGCG CTCTGGGCCG CCGAGGCCGA AGCGGCGGCG
GCGCAGGTCG ATACCGAGAC CATCCGGCTC GCGACCGGGC TCCTGCTGCC GATCTGGTCA
GCGCTTCCGA GCGACCATCT CGTCGTCAAC CGCATCGCCG ACCAGAGCGG CCAGTCCTGG
CTCGGCCGCA TCGTCTTCGA TGATCATGTT GTGCAGCTCT ACACCAAACT CGGCCTCGAT
CGCGCCGAGA ACCTGCCGCC CGGCGATATC GTCAAGTCCG CGCTCGGCGG ACGCAGCGTC
GAACTGACGC AGCCGTTCCC GATGGCGATC AAGCGCGCCG TGGTGAACGG TCTGCCCCGC
ATCGAACTGG TGGGCGCGCC GCCCGCGCAA CTTGCCTATC TCAAATCGCT TGGCTGCTTC
ACCGAGATCA TCAGCTACCG CACGCGCGTG TTCGTGCCCG TGGAGGGTGC TGCCGATATC
CTCAGCCGGC TGCTCAGGCC AGAGGCCCGA GCGGCATAG
|
|---|
| Protein sequence | MSDLFAAAGA SDRLAAQALL PLLRRGGPIT RRQLNEAMTS AFGGSDADGR WTQRDSFELL
EHATVLYLRE RPYTLESFAD VTQAHALVQR LPTQTVRSEA QIAWQQFSTP ADIAALAVLL
ADVGPQDVVL EPSAGNGLLV AQLGDHRSLQ LNELDPTRRS RLAALFPDAL ITGHDGAAIG
SLMAHQERPS VILMNPPFSR SLGRGADDRA AVRHLQAALR HLAPGGRLVA IMPDWFGPNA
RMRDHFETVL REASVRTSLR LEKCYTKHGT SIAVRLFVID KVAGNAPPAV IQRASVEELA
AVLTVPPRAA PPVVAAPVRA APVSGKGISL FRAVKSAPVK PRAYFAPARN DVLPVDYERL
EAPAPLLEQT GVYLPYRPSR IVFDKAGDHP TALVESVAMG SIAAPIPHYV PRLPERTVSE
RLLSASQLET VVYAGHAWSQ TLPGRFKPDK EGVGLVLAED GRTYRKGFFL GDGTGAGKGR
QVAACILDNW LQGRRRNIWV TKNEPLLEDA RRDWTALGGV SADVQPVGNW KIDEPITLEQ
GVLFVTYPTL RSARGDHSRL KQILDWAGED FEGVIFFDEA HEMGGVAGGE GALGAKAGSQ
QGICGVLLQN HLPGARVGYA SATGASDINN LAYAVRLGLW GPETSFPDRE QFISSIRQGG
IAAMELVARD LKASGLYLAR ALSFAGVEYD ILKHELTPAQ IEIYDIYADA WAIIHRNMEA
ALELTGVVDG LEGNTLNSGA KASARSRFES TKQRFFGQVL LSMKLPTVIA AAEQHLAEGK
SVVMQLVTTA ESILDRRLGQ LAPDERAELD IDLSPREYVI DYLERAFPTR QMRVFTDDTG
AERSVPMDDE NGNPVYNPQA LAARANLIEQ LCALPPITSA LDGLLNHFGH DYVAEITGRT
KRLIQASDGR QKLETRSTRT SQAEAAAFMG GLKRILIFSD AGGTGRSYHA SLDAVNQEQR
AHLLLEPGWR ADRAIQGLGR THRTHQACTP LFRPVTTDCK GELRFTSTIA RRLDTLGALT
RGQRQTGGQN LFDPADNLES SYACAALTSW FHLLHLGKLK STTLAEFEER TGLELTDKDG
VLKDELPPIQ RWLNRLLALP IGLQNRIFEE FLALVETRVQ AAREAGRLDV GVETMLVDTA
TIIDDTILRT DPVSGATSHL LTIEVARRKT PVSLERILRI AESHPRHAFL RNAKSGLVAL
QVKARAHMEE KDGTPIPRIE LMRPTRNDYM RLADLAETAW SPIDEEAFRA LWAAEAEAAA
AQVDTETIRL ATGLLLPIWS ALPSDHLVVN RIADQSGQSW LGRIVFDDHV VQLYTKLGLD
RAENLPPGDI VKSALGGRSV ELTQPFPMAI KRAVVNGLPR IELVGAPPAQ LAYLKSLGCF
TEIISYRTRV FVPVEGAADI LSRLLRPEAR AA
|
|---|
| |