Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_5007 |
Symbol | |
ID | 5195963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009508 |
Strand | - |
Start bp | 124328 |
End bp | 126745 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640579442 |
Product | type IV secretion/conjugal transfer ATPase |
Protein accession | YP_001260390 |
Protein GI | 148550960 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.0207382 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.0996879 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAGCC GGGCCAACTC GTTGGGCGGC GCTGCCGCCC GGACGCCGTG GCGGATCCTC AAAAACGAGG CGGACCCCGC GCGTTATCTC CCCTATGCGC GTCACATCGA CGACAATGTC ATCGCGCTCG ACGGGCGCGA CCTCATGATG ATGTTCAAGC TCGATGGCCT CGCATTCGAG ACCGCCGACC CAATCCATCT CAACGACTGG CACGAAAAGC TCAACGGCAC GCTGCGCAAT ATCGCCGACG ACCGCCTGGC GATCTGGACC CATATCGTTC GTCGGCCAAT CACGGACTAT CCCGAAGGCG AGTTTCGCTC GGCCTTTGCG GCCGATCTCG ATGCAAAATA CCGCGCGCGG GTGACCGCCA AGCGCATGTT CGTCAACGAG CTCTACCTGA CGCTCATCAT GCGTCCATCC GTAGGATCGG CCGATCGTAC CGGCGAGCTG CTTCGACGTC TGGCGTCGGC ACGCAAGGAG GGGACCGAAG TCGACGAGGA CGAGCTTGCG CGCTTTGAGG ATAAAGCGCG TGACATCGAG AAGCTCCTCG CACGCTGCCG GCCCCAACGC CTCCACTTGT ACGAGCATAA TGGCCTGATG TTCTCGCAGC CGCTCGAGGT GCTTGAACTG GTGATGATGG GCCGTGCTGG CAGGGTGCCC CTGGTCCGAG GCCATCTCGG CTCCGCCATC TATGGGGAAC GGGTGATCTT CGGCCGGGAG ACGGTCGAGG TGCGGGCGCA TGACACAAGC CGGTTCGTCG GCCTTTTCGG CATTCGCGAA TATCCGGCCA TGACGCGGCC AGGGCAGATG AACGCGCTCC TCAGCCAGGA TTTCGCGTTC GTCGTGACGC AGTCTTTCGC GTTCATGGGC AAAGCGCGGG CCTCGGAGCG GTTGCGTCGG CGTCAGAACC AGATGGCTTC GACGGAGGAT GCCGCTGCGA GCCAGGCGCT TGAGCTTGCC GACGCGGCCG ACGATCTGCA GAGCAATCGC TTTGTCCTGG GCGAGCATCA TTTCTCGCTC GCGGTCTTCG GTGAAAATCA GAAGCGACTG GCCGAAAATC TCTCGACCGC TCGGGCGGCG CTCGCCGACG CGGGTCTGGT AGCCGCTCGG GAGGGTCCGG CGCTGGAGGC GGCCTTCTGG TCGCAGCTTC CTGGCAACTT CGCATGGCGT GCGCGGCCAG CGGCGATCAC GTCACGCAAT TTTGCCGCGC TCTCGCCGTT CCACACTTTC CCCGCCGGCA AGCCCGATGG CAATCACTGG GGTGCTGCGA TCGCGTTGAT GAAGACCGCA GCCCAGTCTC CCTTCTATTT CAACTTCCAT GTCAACGACC TTGGCCACAC GCTGATCATT GGCCCGTCGG GCGGCGGCAA AACCGTCGTC CAGAATTTCC TGATGGCGCA GCTGGAGAAA ACCGGCGCGC AGCAGATCTT CATCGACAAG GATCGAGGGG CCGAGATCTA TGTGCGGTCA TCCGGCGGCA CCTATCTTGC GCTGCGCAAT GGGGTGCCGA CCGGGTTTGC GCCGCTGCGC GCGCTTGAGC AGACCCCGGG CAACATCGTC TTCCTCGGCA GGCTGATCCG CCATCTGGTG ACCCCATCGG GCACCCAGCT CGGCGTCACG CAGGAGCGGA TGATAGACGA GGGCATCCTC TCGATCGGAC GCCTTCCCCC GGAGGAGCGG TCCATCCTCG CGCTTCGCCA ATTGCTCGGA CAGCGCGATC CGGAAGGGAT AGGCGCGAGG CTTGAGAAAT GGTCGCGCGG CGGCGCACTC GGCTGGGTGT TTGACAATGA CAGGGACGAG CTGACCCTCG AGGCCAGGTT CATCGGTTTC GACATGACGG ATTTCCTCGA CAATCCCGAG ATCCGCACGC CGCTGATGAT GTATATGTTC CACCGGATTG ATGCCCTGCT CGATGGCCGT CGCCTCGTGA TCGACATCGA CGAGTTCTGG AAGGCGCTGG GCGATGATGC GTTCCGCGCC TTCGCGCAGG ACGGCCTGAA GACCTACCGG AAGCAGAATG CCTTTCTGGT GTTCGGGACG CAAAGCCCGG CTGACGCTCT GCGATCGGAC ATCTCGCACA GCATAATGGA GCAGGTCGCC ACCAAGATCC TCTTGCCCAA CCCCCATGGC CGAGAGGTCG ATTATATCGA CGGGCTCGGC CTCACCCGCG CCGAGTTCAA GCTCATCAGA AACGATCTGA TCCCCGAAAG TCGGCGATTT CTGGTCAAAC AGGGTCACGA TTCCATCGTG GTGGAACTCG ATCTCGGCGG CCTGTCCGAC GAGTTGGCCG TTCTTTCGGG CACCACCGAA ACCGTCGGAA TCCTCGATCA GGTTCGCCGC GACCAAGGCG ACGATCCCAG CCAATGGCTG CCCGTCTTCC ACGAGCGCCG CCGTGCCACC ACCAAAAGGA AAGGATAA
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Protein sequence | MASRANSLGG AAARTPWRIL KNEADPARYL PYARHIDDNV IALDGRDLMM MFKLDGLAFE TADPIHLNDW HEKLNGTLRN IADDRLAIWT HIVRRPITDY PEGEFRSAFA ADLDAKYRAR VTAKRMFVNE LYLTLIMRPS VGSADRTGEL LRRLASARKE GTEVDEDELA RFEDKARDIE KLLARCRPQR LHLYEHNGLM FSQPLEVLEL VMMGRAGRVP LVRGHLGSAI YGERVIFGRE TVEVRAHDTS RFVGLFGIRE YPAMTRPGQM NALLSQDFAF VVTQSFAFMG KARASERLRR RQNQMASTED AAASQALELA DAADDLQSNR FVLGEHHFSL AVFGENQKRL AENLSTARAA LADAGLVAAR EGPALEAAFW SQLPGNFAWR ARPAAITSRN FAALSPFHTF PAGKPDGNHW GAAIALMKTA AQSPFYFNFH VNDLGHTLII GPSGGGKTVV QNFLMAQLEK TGAQQIFIDK DRGAEIYVRS SGGTYLALRN GVPTGFAPLR ALEQTPGNIV FLGRLIRHLV TPSGTQLGVT QERMIDEGIL SIGRLPPEER SILALRQLLG QRDPEGIGAR LEKWSRGGAL GWVFDNDRDE LTLEARFIGF DMTDFLDNPE IRTPLMMYMF HRIDALLDGR RLVIDIDEFW KALGDDAFRA FAQDGLKTYR KQNAFLVFGT QSPADALRSD ISHSIMEQVA TKILLPNPHG REVDYIDGLG LTRAEFKLIR NDLIPESRRF LVKQGHDSIV VELDLGGLSD ELAVLSGTTE TVGILDQVRR DQGDDPSQWL PVFHERRRAT TKRKG
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