| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4889 |
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| Symbol | |
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| ID | 5195943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009508 |
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| Strand | - |
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| Start bp | 1874 |
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| End bp | 2584 |
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| Gene Length | 711 bp |
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| Protein Length | 236 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640579330 |
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| Product | 3-oxoacid CoA-transferase, A subunit |
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| Protein accession | YP_001260278 |
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| Protein GI | 148550848 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 55 |
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| Plasmid unclonability p-value | 0.269229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0348451 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCAAAA AGATCTACTC GAATCCCGGC GCAGCGCTGG AAGGCCTGCT TTTTGACGGT
ATGACCATCA TGTCTGGTGG GTTCGGACTG TCGGGAAACC CGGAGAGCCT CATTCCGGAA
ATCAGAGCAT CGAGGGCAAA TAACCTCACG GTGATTTCCA ACAATGCCGG GGCCGATGGC
TTCGGCCTAT GGATGCTCTT GGAGACGCGC CAGATACGGA AGATGATTTC GTCCTACGTC
GGCGAGAACA AACTGTTCGA GCAGCAATAC CTGTCGGGCG AACTGGAACT CGAGCTCAAT
CCGCAAGGCA CGCTTGCCGA GCGGATTCGC GCCGGCGGTG CAGGAATACC GGCGTTCTAC
ACCCGGACCG GGGTCGGGAC TGTGGTCGCC GAGGGCAAGC CGGTGGAACA GTTTGATGAT
GAGGACTATG TCCGCGAAAC CTGGCTGCGG GCCGATCTGG CGATTATCAA GGCTTGGCGC
GCCGATCCGG CGGGTAACCT GATGTTCCGC AAAACTGCGC GCAATTTCAA CCCCAACATG
GCGACCGCAG CCAAGGTCAC AGTAGTCGAA GTCGAAGAAA TCGTTGAGCC AGGCACGTTC
GATCCCGATT GCATCCATAC GCCCGGTATC TACGTAGACC GCATCGTCGT TTCGACGATC
AACGAAAAGC GGATCGAAAA AATGACTACT CGCCCTCGGG AGACTGTTTG A
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| Protein sequence | MSKKIYSNPG AALEGLLFDG MTIMSGGFGL SGNPESLIPE IRASRANNLT VISNNAGADG
FGLWMLLETR QIRKMISSYV GENKLFEQQY LSGELELELN PQGTLAERIR AGGAGIPAFY
TRTGVGTVVA EGKPVEQFDD EDYVRETWLR ADLAIIKAWR ADPAGNLMFR KTARNFNPNM
ATAAKVTVVE VEEIVEPGTF DPDCIHTPGI YVDRIVVSTI NEKRIEKMTT RPRETV
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