Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4738 |
Symbol | |
ID | 5198292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 5211320 |
End bp | 5213590 |
Gene Length | 2271 bp |
Protein Length | 756 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640584294 |
Product | TonB-dependent receptor |
Protein accession | YP_001265213 |
Protein GI | 148557631 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCACTCT CTAGCCTGCT CGCGGCGCCG CTGTCGGCGC GTCCCGTCCG GATCGACATT CCCGCCGCCG ACCTCGGCGA CGCGCTGTTC GCGCTGTCGC GGCAGACCGG GCTGTCGGTC GGCATGGCGG GCGCCATTCC CCGTCACCGC ACCCGGCCGA TCAGCGGCAC GATCGAGCCC GCCGCCGCGC TCGAACGGCT GTTGCGGGGC AGCGGCCTGC GCGCGGTCCG CGCCGCCGGG CTGTGGCGGC TCGAACGGCT CCCGCGCGAG GTGACGCGGT CGGGCTTCGT CGGGCCGACC GAGGCGATCG AGGACATCAT CGTCACCGGC ACCAAGCGCG ACGAGAATCT CGCCAGCGTG CCGATCGCGG TCAGCCTGAT GCGGCCCGGC ATCGCCGACC GGCTGCTCTA CGGGCGGGGC CTGCACGACA TGATCGAGAC CGGGGAAGGG GCGTTCGCCA CCAATCTCGG CCCCGGGCGC GACCGCATCT TCCTGCGCGG CGTCGCCGAC AGCGCGTTCA ACGGGCCGAC CCAGTCGACG GTGAGCCTGC TGCTCGACGA CGCGCGGGTC AGCTACGCCA CCCCCGATCC CGACCTGCGC CTCGTCGACA TCGATCATGT CGAGCTGCTG CGCGGGCCGC AGGGGACGCT CTACGGCACC GGCGCGCTGG GCGGGATCAT CCGGATCGTG CCGAACAAGC CCGACCTCGC CGACGGGTCG GGCTTCGCCG CGATCGACGC CGGCGTCACC CGCCACGGCG CCGCCAGCGG CGCGATCGAG GGCGGGATCA ACGTCCCGCT GTTCCGCGAC CGGCTGGCGA TCCGCATGGT CGGCTATGCC GAGCGGATCG GCGGCTGGAT CGACGATGCC GGCCGGGGCG AACGCAACGT CAACCGCACC GCGCGATACG GCGGGCGGCT GGCGCTGCGC TGGCAGGCGA CGCCCGACTG GATGGTCGAC CTCGGCGGCG CGATCCAGGG GATCAATTCC GACGACAGCC AATATGCCGC GCGCGGCCTG GTCCGCTCGA CCGCGCTGGC CGAGCCCCAT GACAATGATT TCGTCGCGCT GACCGCGACC GTCCGGGGCG TGGTCGGCGC GTTCGATTTC GTGTCGGCCA GCGCCTTCGT CCACCATGAG GTGGAAAGCG TGTTCGATGC CGGCGCGGTG GCGGCGGCGC GCGGCCTGCC GGCGCCGCTC GGCTTCAGCG ACATGCGCCG GCTGCGGCTC GGCACGCAGG AATGGCGGCT CAGCGACCCG GCGGCGACGC GGCCCTGGGT GCTCGGCCTC GCGCTGCTCA AGGCCGACAA CATCTATCTC GGCCGCTTCT TCGCTCCGGG CGGCGGGGCG TTGCAGGACA TCTCGCTCCA CGACGACGCG ATCGAGGCGG CGCTGTTCGG CGAGGCGAGC CAGCCGCTCG GCGGCGCGCT GACCGCGACG CTCGGCCTGC GCGGCTTCTA TTCGAAGGTC GACAACGAGC AACAGGGCCA GACCCGCCGC CGCGCGCGCA AGGCCGGCGT CACCCCCAGC GCGACCCTGT CCTGGGCGCC GCGCGACGGC GCGCTCGCCT GGCTGCGCTA TGCCAGCGCG ATCCGGCCGG GCGGGCTCAA CCCCGACGGC GCGCCCGACC TCGCCGATTT CCGCTCGGAC GATCTCAAGA GCGTCGAGCT CGGCTGGCGC CTGCTGCTGT GGCGGCGGGT GCGGCTGAAC GGCACGCTGT TCGGGTTGCG GTGGGAGAAT ATCCAGAGCG ACAGCATCGG CACCGACGGT CTCGTCCGCA CGATCAACGC GGGCAAGGGG CGCAATATCG GGCTCGAGCT CGGCGGATCG GTCGATCTGT CGCCATGGTC GATCGATGCC CATCTGACCG TGCAGCACGC CCGGCTCTAC GCGCCGTCGG CGGCGGCCAA CGCGGCGGGG GACGACAACC GGCTGCCGGT GCTGCCCGAT CGCGCCGGCC GGGTGAAGAT CGGCTATGAT CGCGTGATCG CCGGGATTCC CGCGGGCCTG TTCGTCGCGG CGCGCTACAT GGGCAAGGCG CGGCTCAGCT TCGATCCGGG GCTCGCCCGC TCGATGGGCG GCTATTGGAC GGCCGATGCG GGACTGGTCG TCGCGCCGGC CGACTGGCGG GTGGCGCTCA CCGTCTCCAA CCTGTTCGAC GGCCGGGGCG ACAGCTTCGG CTTCGGCAAT CCCTTCTCGC TGCGTCAGTT CGATCAGCAC ACGCCCGTCC GCCCGCGCAC CGTCTCGATC CGCATCGAAC GGAAATTCTG A
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Protein sequence | MALSSLLAAP LSARPVRIDI PAADLGDALF ALSRQTGLSV GMAGAIPRHR TRPISGTIEP AAALERLLRG SGLRAVRAAG LWRLERLPRE VTRSGFVGPT EAIEDIIVTG TKRDENLASV PIAVSLMRPG IADRLLYGRG LHDMIETGEG AFATNLGPGR DRIFLRGVAD SAFNGPTQST VSLLLDDARV SYATPDPDLR LVDIDHVELL RGPQGTLYGT GALGGIIRIV PNKPDLADGS GFAAIDAGVT RHGAASGAIE GGINVPLFRD RLAIRMVGYA ERIGGWIDDA GRGERNVNRT ARYGGRLALR WQATPDWMVD LGGAIQGINS DDSQYAARGL VRSTALAEPH DNDFVALTAT VRGVVGAFDF VSASAFVHHE VESVFDAGAV AAARGLPAPL GFSDMRRLRL GTQEWRLSDP AATRPWVLGL ALLKADNIYL GRFFAPGGGA LQDISLHDDA IEAALFGEAS QPLGGALTAT LGLRGFYSKV DNEQQGQTRR RARKAGVTPS ATLSWAPRDG ALAWLRYASA IRPGGLNPDG APDLADFRSD DLKSVELGWR LLLWRRVRLN GTLFGLRWEN IQSDSIGTDG LVRTINAGKG RNIGLELGGS VDLSPWSIDA HLTVQHARLY APSAAANAAG DDNRLPVLPD RAGRVKIGYD RVIAGIPAGL FVAARYMGKA RLSFDPGLAR SMGGYWTADA GLVVAPADWR VALTVSNLFD GRGDSFGFGN PFSLRQFDQH TPVRPRTVSI RIERKF
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