Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_4555 |
Symbol | |
ID | 5196774 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 5013125 |
End bp | 5014510 |
Gene Length | 1386 bp |
Protein Length | 461 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640584108 |
Product | phosphoglycolate phosphatase |
Protein accession | YP_001265031 |
Protein GI | 148557449 |
COG category | [R] General function prediction only |
COG ID | [COG0546] Predicted phosphatases |
TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.82365 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.133597 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGCCG ATTTTCCCTT CGACGTCGTC GCCTTCGATC TCGACGGCAC CCTTGCCGAC ACCGCGCCCG ACCTCACCGC CGCGCTCAAC CACGCGCTGG GCGTGCTGGG ACGGCCGCCG GTCCCGGCCG AGGACGTCCG CCACATGGTC GGCCATGGCG CCCGCGCGCT GCTCCAGAAG GGGCTCTCCG CGACCGGCGA GATGACCGAC GAACTGGTCG AGCGGGGCTT CCCTATCTTC ATCGACTATT ATCTCGACCA TATCGCCGAC GGGACGCGGA TCTTCCCCGG CCTGAACGCC GCGCTCGACC GGCTCGCGGC GCGCGGGGTC AAGCTCGCGG TCTGCACCAA CAAGGCCGAG CATCTGGCGC GGCGCTGCAT CGACGAACTC GGCTGGAGCG ACCGCTTCGA CGCGCTGGTG GGCGGCGACA CGCTGCCCGT CCGCAAACCC GACCCCGCGC CGCTGTTCGA GGCGATCGCG CGGTGCGGCG GGGGCAGGGC GGCCTATGTC GGCGACTCGA TCACCGATAC CGATACGGGC CGCAACGCCA ATGTCCCGAC GGTCGCGGTC AGCTTCGGCT TCTCCGACCG ACCGGTCGAG CAGCTCGACG CCGCAGCGCT GATCGACCAT TTCGATGATC TGATCCCGAC GCTCGAACGG CTCGGCCAGG CGCCCAACTG GCTGGGCTGT CCGATCTGCG GATCATCCGC CTTCGTCGCG AACCACAAGG GCGGCTATGT CCAGTGCGAC GGCTGCGACT CGAACGAGCG AGCTCGGCTG CTATGGATGA CGCTCGTCAG GGAAGGGCTG CTGACGCCGG GCAAGCGTGT GCTTCACATC GCTCCCGAGC TCTCGCTCGC GGAACGGTTT CATGCGATCT GGGGCGACGG CTATGAGCCG GTCGACATCG ATCCGGCGAA CTACGCCTTC GCCCCGAACA TCCGGAGGAT CGATCTGGTC GAGGATGCGG CGAAGCTGCC TTCGGACCAT TATGACCTGA TTATCCATTC GCACGTGATG GAACATATTC CCTGCAATAT CACAGCGATA CTCTATCATC TTCATAGGTC GCTGAAGCCT TCGGGCAAGC AGGTCTGTTG TGTGCCGATT ATCCGCGACG GCCATTATGC CGAGGATCTG GGGCTGATCG CGCCCGAGGA CGCCGTCGTT CGCTTCGGGC AGGACGATCA TGTCCGCACC TTCGGCGGCC GGGACATCCA GCGGACATTG GGCATGCTCT TCGCGCTGCC CGAGACCTAT GACCTCACCC GCAGCTTCGA CGAGGCGACG CTGATCGCCA ACAACATCCC TCGGATCAAC TGGCGCGGCT GGTCGCCCAA TTCGGTGCTG GTGCTCGAAA AGGACGACCT GCTGCTCAAG CCCTGA
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Protein sequence | MPADFPFDVV AFDLDGTLAD TAPDLTAALN HALGVLGRPP VPAEDVRHMV GHGARALLQK GLSATGEMTD ELVERGFPIF IDYYLDHIAD GTRIFPGLNA ALDRLAARGV KLAVCTNKAE HLARRCIDEL GWSDRFDALV GGDTLPVRKP DPAPLFEAIA RCGGGRAAYV GDSITDTDTG RNANVPTVAV SFGFSDRPVE QLDAAALIDH FDDLIPTLER LGQAPNWLGC PICGSSAFVA NHKGGYVQCD GCDSNERARL LWMTLVREGL LTPGKRVLHI APELSLAERF HAIWGDGYEP VDIDPANYAF APNIRRIDLV EDAAKLPSDH YDLIIHSHVM EHIPCNITAI LYHLHRSLKP SGKQVCCVPI IRDGHYAEDL GLIAPEDAVV RFGQDDHVRT FGGRDIQRTL GMLFALPETY DLTRSFDEAT LIANNIPRIN WRGWSPNSVL VLEKDDLLLK P
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