| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4243 |
|---|
| Symbol | |
|---|
| ID | 5196520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4676567 |
|---|
| End bp | 4677934 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640583797 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001264721 |
|---|
| Protein GI | 148557139 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00895] benzoate transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.104244 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAGG CGATTGCCAG GGATGGCGCC CCCACCGTCG AAGCGCTGAT CGACGCCGCG
CCGATCAGTC GCCTCCAGAT CGCCGCGATC GTGCTGTGCG TGCTCGCTTC GGTGCTCGAC
GGCTTCGACA CCCAGTCGAT CGCCTTCGTC GCGCCCGCGA TCTCCGCGCA ATGGTCGGTC
TCGCAGCTCG AATTCGGCTT CGTCTTCTCC GCGACGCTGC TGGGATCGGT GATCGGCAGC
GCGGTGTTCG GCATCATGGC CGACCGGATC GGCCGTCGTC GGCTGATCAT CGCCACCACC
GCGATGTTCG GCCTGTTCAG CGCCGCCTGC GCGCTGGCCG CCAATTTCGA GCAATTGCTC
GCCTTCCGCT TCCTCGGCGG GCTGGGGATG GGCGGGCTGA TCCCGAACAT GCTCGCGCTG
GCCGCCGAAT ATGCGCCGCG CCGCGTCCGC GCGACCATCG TCACCGGCGT GCTGTGGGGC
TTCCCGTTCG GGGCGGTGCT CGGCGGGATC GTCTCGGCGC CGCTGCTCGA GCAGGCGGGC
TGGCGCGCGA TCTTCTGGCT GGGCGCGGCG GCCCCCGCGC TGCTCGCGCT GGCGATGATC
CCGCTGATGC CGGAGTCGCT GCGCTATCTC AGCCTCGATC CGGGCAAGCG CGATCAGGTC
GTCGGCCTGC TGCGCCGGAT CGCGCCGGAG CGGGCGGACG CGGTCGTCAT CGAAGCGCGG
CAGGCCGAAC GGGCCAGGCC GGGCGTCACG CAGCTCTTCA CCGCCGACCT CGCCGTTCCA
ACGGTGATCC TGTCGATCAG CCTCTTCCTT TCGCTGTTCC TGACCTATGC CCTGATCAAC
TGGGTGCCGA CGCTGCTGAC CAGGAGCGGC CTGTCGATGT CCAGCGCGAT CCTCGGGGCG
GTGGCGCTCA ACTTCGGCGG CATCGTCGGC AGCGCCTTCT TCTCCTGGGG GCTGGACCGG
GTCGCGCGGC CGGCGCTGCT GCTCGCGGCG GGCTATGGCG CGGCGGCGGG CATGATCGCG
CTGACCTCGC TGGGCGGCGG CAGCCCGGTG GTCGCGCTGA CCCTGCTGCT GCTGTGCGGC
GTGTTCCAGA TCGGGGCGCA GCTCTCGCTG ACCGCCTACA CCACCGCGAT CTTCCCGGTG
CGGCTGCGCG GCACCGGCAT CGGCTTCGTC CAGGCGGTGG GCCGCACCGG ATCGCTGATC
GGGCCGGTGG TCGGTGGGCT GCTGCTGTCG CTCGGCGTGC AGCCGAACGA GATGCTGCTC
CTTTCGGTGA TCCCCGCCGG GCTCTGCGGC CTCGCGCTGC TCCTGCTGGG GGCGATGCGC
CGATCGGAGC GGGGATCGCA AGCATCCACC ATGGAGGAAC GGCAATGA
|
|---|
| Protein sequence | MKQAIARDGA PTVEALIDAA PISRLQIAAI VLCVLASVLD GFDTQSIAFV APAISAQWSV
SQLEFGFVFS ATLLGSVIGS AVFGIMADRI GRRRLIIATT AMFGLFSAAC ALAANFEQLL
AFRFLGGLGM GGLIPNMLAL AAEYAPRRVR ATIVTGVLWG FPFGAVLGGI VSAPLLEQAG
WRAIFWLGAA APALLALAMI PLMPESLRYL SLDPGKRDQV VGLLRRIAPE RADAVVIEAR
QAERARPGVT QLFTADLAVP TVILSISLFL SLFLTYALIN WVPTLLTRSG LSMSSAILGA
VALNFGGIVG SAFFSWGLDR VARPALLLAA GYGAAAGMIA LTSLGGGSPV VALTLLLLCG
VFQIGAQLSL TAYTTAIFPV RLRGTGIGFV QAVGRTGSLI GPVVGGLLLS LGVQPNEMLL
LSVIPAGLCG LALLLLGAMR RSERGSQAST MEERQ
|
|---|
| |