| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4198 |
|---|
| Symbol | |
|---|
| ID | 5197251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 4621250 |
|---|
| End bp | 4623289 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640583752 |
|---|
| Product | formate dehydrogenase |
|---|
| Protein accession | YP_001264676 |
|---|
| Protein GI | 148557094 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.100839 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.216188 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGCAT CGGAAGATCG CACGAAATCC GTCAGGACAT ATTGCCGGAT ATGCCCGGCC
GGCTGCGGCA TGATCGCCGA TGTCGTGGAT GGGAAGGTCG TCGGCGTGCG CGGCGACAAG
GCGCACCCGC TGTCATATGG ATATCTCTGC CCCAAGGGAC AGGCTTCGGC GAAGGCCCAT
AACAGCCCCC ACCGCCTCGA CAGGCCGCTC ATGCGGAGCA GCGGCACATT GTCGCCTGCG
AGCTGGGATG ACGCGATGGA CGATATCGGC GGAAAACTGG TGGAAATCCG CCAGGCTTCG
GGGCCTGATG CGATCGGCGT CTATTTCGGA ACCGCCGGCT TCTTCGATAC GGGAGGGATG
TTCAGCTTCC CGTTCATCGG GCAATTGGGA ACGACGAGCC TCTATACGGC GACTTCGGTC
GACTCCCCCG GCTATCAGCT CGTCGCCGAG CGCATGTCGG GCAATCATTG GCTGCTGCCG
AAGCCCGACC GGGACGCGAA CTTCGTGATC CTGAACGGGA TCAATCCGAT CGTTTCGCAC
GGCCATAATT TCTTCATGGC GGCTCCCAAG GCGCAGCTAC GGAAATGGGC GGCACGGGGC
GGCCTCTGGG TGATCGACCC CCGGCTGACG GAATCGGCGG AGATCGCGAC GGGACATCTG
CGCCCGCTCC CGGGAACCGA ATATGCGCTG TTCGGCTTCC TGATCCGCAG CCTCCTCGCC
GATGGCGGCG CCGACGTCGA ATTCCTGAGG GACTTTTGCT CGAACGTCGA CAGCTTGCGC
GACAGCGTGG CGCCGTTCGA TCTCGATGCC GCCGCCTCGA TCACGCACAT AGAACAATCC
GAAATCCTCC GCCTGCTCGC GGGAATCCGC CAGGCCGGCC GGATCGCGCT GCAACTGGGC
ACCGGCACTT CGATGTCGAA GAACGCCAAT GTCACGACCT GGCTGGGATG GGCCCTCAAC
GCCGTGACCG GTTCGCTGGA TCGGCCGGGC GGCATGTGGA TCAATCGCGG CATGCTGCAG
GATCTGGCAA AGGTCGGATG GCAGCCGACC AACACCACCC GGCCGGGCCC GAAAAGCCGC
CCCGACCTTC CGGGCCGCGC CGGCCAGATG CCGAGCGGCG CGCTGATCGA CGAAATCGAG
GCCGGCAATC TCAGAGCCCT GATCGTCGTC GGCGGGAATC CCGTCATCGC CCTGCCCGAC
ACCCGGCGAT TGACCGCCGC GCTGGGCAAG CTCGACCTGC TGGTCGTGCT CGACGTCCTT
CCCACCGGGA CGACCGAGCT CGCCACGCAC GTCCTCCCCT GCACCGGACA GCTCGAACGC
GCCGACATCA GCATGGGAGA CATCGCCTAT ACGCGCGAGT TCGCCCAATA TGCGCCGCGC
GTCGTCCCGC CCGGGGCGGA ACGGCGGCCG ACCTGGTGGA TCCTGGGCGA GCTCGGCCGC
CGGCTCGGCA TCGAGATCGC GCCCCCGGAT CCCGATGCCG ACGAAGCGGC GCTGTTCAGG
CCACTGGCGG CCGCGCCCCG CTTCGACATC GCGGCGTTCG ACGGCGACAC CGCCGTGAGT
TTCCTGGAGG AGGAATGCAG CTTCGGCTGG GTATCACGCT TCCTTCCCGA CAATCGCTGG
AACCTCGCCC CCGAAGAACT GGTCGAGCAG CTCAAGCACA GCACGCCGCC CGGATGCGAT
CCCGAGGCGC TTCTGCTGAT TCCATCGCGG CAGCGCCACA AGATCAACTC GACCTTCAAC
GACGGCATTG CGGACCGGCA CGGCCACAGC CTGCCCGGTC TCTATATCAG CGAGCGGGAC
GCCGCGCGTT TCGGGCTGGA GCCCGGCGGA CTGGCCGAGG TGGCGAGCGC AACCGGCAAG
CTGGTGGTGA CGGTCCACAT CGACCGGCGC ATGGGGGATG GCTGCGTCAG CATTCCGCAT
GGCTTCGAGC GGGCCAATGT CGGTCACCTG ACCTCGACGC GCATCAACAC CGACCCGCTG
TCGGGCATGA TCGAGCAGTC GGGCGTCGAG GTTCGGGTGC GGCCGATCGG TCCGCCATGA
|
|---|
| Protein sequence | MAASEDRTKS VRTYCRICPA GCGMIADVVD GKVVGVRGDK AHPLSYGYLC PKGQASAKAH
NSPHRLDRPL MRSSGTLSPA SWDDAMDDIG GKLVEIRQAS GPDAIGVYFG TAGFFDTGGM
FSFPFIGQLG TTSLYTATSV DSPGYQLVAE RMSGNHWLLP KPDRDANFVI LNGINPIVSH
GHNFFMAAPK AQLRKWAARG GLWVIDPRLT ESAEIATGHL RPLPGTEYAL FGFLIRSLLA
DGGADVEFLR DFCSNVDSLR DSVAPFDLDA AASITHIEQS EILRLLAGIR QAGRIALQLG
TGTSMSKNAN VTTWLGWALN AVTGSLDRPG GMWINRGMLQ DLAKVGWQPT NTTRPGPKSR
PDLPGRAGQM PSGALIDEIE AGNLRALIVV GGNPVIALPD TRRLTAALGK LDLLVVLDVL
PTGTTELATH VLPCTGQLER ADISMGDIAY TREFAQYAPR VVPPGAERRP TWWILGELGR
RLGIEIAPPD PDADEAALFR PLAAAPRFDI AAFDGDTAVS FLEEECSFGW VSRFLPDNRW
NLAPEELVEQ LKHSTPPGCD PEALLLIPSR QRHKINSTFN DGIADRHGHS LPGLYISERD
AARFGLEPGG LAEVASATGK LVVTVHIDRR MGDGCVSIPH GFERANVGHL TSTRINTDPL
SGMIEQSGVE VRVRPIGPP
|
|---|
| |