| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4085 |
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| Symbol | |
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| ID | 5200308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4485479 |
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| End bp | 4487536 |
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| Gene Length | 2058 bp |
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| Protein Length | 685 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640583641 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001264566 |
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| Protein GI | 148556984 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.141893 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCTCTC GATACGCACT TGCGCTTTGT TCCGTTGCTT CCGTCCTGCT GACCGCCTCG
CCCGCCTTCG CGCAGAAGAG CGCCGCCGCG GCGACCGAGG CGGACGCCCA GGGCGACATC
ATCGTCACCG CGCGCCAGCG CGCCGAGCCG CTCCAGAAGG TGCCGGATTC GATCACCCTG
CTGTCGGCGG ACATGATCGA GAAGGCCGGG ATCAACTCGA CCGCCGATCT CGGCCGCTTC
GTGCCCAACC TCTATTTCCG CGACGGCCAC CGGGGCGGCG CCTCGGCGAT CACCGTCCGG
GGCCTGATCA CGCCGCAGGG CGGCGAGATG CCGATCGCGC TGGTCGTCGA TGGCGTGCAG
CTTTCGGGCA ACGACTATTT CCTCCAGGAC CTGCTCGACG TCGAGAACAT CCAGGTGCTG
CAGGGGCCGC AGGGCGCGCT CTACGGCCAG GGCGCGGTCG CCGGCGCGGT GATCATCACC
ACCCGCCAGC CGACCGACGA GTTCCAGATC TACGCGAAGG CGGGATATGG CAGCGGCGAC
AACTTCACCG GCGTCGCCCG CATCTCCGGC CCGCTGGTCA ACGACCGGCT CTATTTCAAG
CTGCTCGGAT CGTTCCGCGA GGCCGACGGC GTGATCAAGG ACGCGAACGG CGTGCCCCGC
GACTATGCGC ATCGCTATCT GGTGCGCGGC GAGATCAAAT ATGATCATGA GGCGACGCGC
GCCACGGCGG CGCTGAGCTA TGGCCGCGAC CGCAATGGCG CGATCTACCA GGATTATGCG
CCGGTCGTGA ACGGCGTGGT CCAGCCCGAC GACCCCGGCC TCGGCATCAC CAGCGACATC
GTCGGCGTCG ACCGGGTCAG GCGCTTCTCC AGCTCGCTCA GGATCGAGCA GGACATCGGC
GACGGCGCGC TGGCGCTGAC CACCGCCTAC AACACGCTCG ACCAGGTGAC GCGCGGCGAC
GCCGACTGGA CCGCGGCGGA CCGCTTCTCG CAATATAATC TGAACGACTA TCGGCTGTTC
AACGGCGACC TCCGCTACAC CTCGAAGAGC GACCAGCGGC TGCGCTACGT GTTCGGCGCC
TTCTACCAGA AGCGCCGGAT CGAGGAGGCG GTGCAGGTCG CCTTCCTGCC CGGCTCGGGC
CGGACGGGCT TCGCGGTCGA CACCCGCGAC ACCCAGCGCA GCGAGGCGTG GGCGCTGTTC
GGGCAGCTCA ACTATGACGT CACCAGCAAG CTCGAGCTGA CCACCGCGCT GCGCTACGAC
GACAACAACC GCAAATTCTT CAACATCGGC ACCAATGTGA AGATGCGGGC CAAGTTCAAC
AAATTGCAGC CCAAGGTGTC GCTGGCCTAC AAGTGGACCG ACGGCCTGAT GACCTATGCG
ACCTATGCGC AGGGCTTCAG GAGCGGCGGC TTCAACACGG CGGCGTCGCT GTTCGCCGGG
CCGATCATCG CGGCGGAGAA GTCGAACAAC TACGAGCTCG GCTTCAAGGC GCGCCTGCCG
CTCCATTCGA ACCTGACGGC GTCCTTCTAC CGCATCGACG TCAAGGACGC GCAATTCTAC
TTCGCGTCGT CGATCCCGCC GTCGCAGAAC ACGATCAACA TCAAGTCGGT GAAGATCACC
GGCGGCGAGG TGCAGCTTTC GTCCAACCCG ATCAAGCCGC TGCGCATCGA CCTGGGCGTC
GGCGTCAGCC ATTCCGAGAT CCAGGATTTC AACGGCACCG GCTTCAACGA CGGCAACATC
TTCCCGACGG TGCCGGCCTA TTCGATCCGC GGATCGATCA GCTACGCCAT CCCGGTGGGC
GAGGACCTGA CCATCACTCC GCGCGTCGAC ACCTATGAGC GCGGCCGGCT GTTCTTCGAC
GCCGCCAACC TGGTGCGGTC GGGGCCGATC AACCTGACCG ACCTCCGGCT CAACGTCGAG
ACCGGGCCGT GGGAGTTCTC CGGCTTCGTC ACCAATGTCG GCAACACCCG CTATGGCGAG
ACGGTGACGC CGACCAGCGG GCTGCGGACG ATCAATGCGC CGCGGACCTA TGGCTTCTCG
GTGAGTTTCC GTCATTAA
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| Protein sequence | MVSRYALALC SVASVLLTAS PAFAQKSAAA ATEADAQGDI IVTARQRAEP LQKVPDSITL
LSADMIEKAG INSTADLGRF VPNLYFRDGH RGGASAITVR GLITPQGGEM PIALVVDGVQ
LSGNDYFLQD LLDVENIQVL QGPQGALYGQ GAVAGAVIIT TRQPTDEFQI YAKAGYGSGD
NFTGVARISG PLVNDRLYFK LLGSFREADG VIKDANGVPR DYAHRYLVRG EIKYDHEATR
ATAALSYGRD RNGAIYQDYA PVVNGVVQPD DPGLGITSDI VGVDRVRRFS SSLRIEQDIG
DGALALTTAY NTLDQVTRGD ADWTAADRFS QYNLNDYRLF NGDLRYTSKS DQRLRYVFGA
FYQKRRIEEA VQVAFLPGSG RTGFAVDTRD TQRSEAWALF GQLNYDVTSK LELTTALRYD
DNNRKFFNIG TNVKMRAKFN KLQPKVSLAY KWTDGLMTYA TYAQGFRSGG FNTAASLFAG
PIIAAEKSNN YELGFKARLP LHSNLTASFY RIDVKDAQFY FASSIPPSQN TINIKSVKIT
GGEVQLSSNP IKPLRIDLGV GVSHSEIQDF NGTGFNDGNI FPTVPAYSIR GSISYAIPVG
EDLTITPRVD TYERGRLFFD AANLVRSGPI NLTDLRLNVE TGPWEFSGFV TNVGNTRYGE
TVTPTSGLRT INAPRTYGFS VSFRH
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