| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4031 |
|---|
| Symbol | |
|---|
| ID | 5197156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4434154 |
|---|
| End bp | 4434804 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640583588 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_001264513 |
|---|
| Protein GI | 148556931 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | [TIGR03027] putative polysaccharide export protein, PEP-CTERM sytem-associated |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.123149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.629032 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTTTG GTGCTGCGCT GAAGCGGCTC GTCGCGATGC TGGCGGCGGC GATGATGCTC
GCCGCGATGC CTGCCGGCGC CTATGCCAAG GACAAGGAAC TGCCGTCGGC GCCCTTCGTG
CCCGACGGCG GCGCGCCGGG CGAGGACTAT ACGATCGGGC CGCTCGACGC CCTCACCGTG
TTCGTGTGGC GCAACCCGGA GCTGGGCGCG CAGGTGCAGG TGCGGCCCGA CGGGCGCATC
ACCCTGCCGC TGATCAACGA CATGGTCGCG GTCGGCAAGA CGCCCGCGAA GCTGTCGGAC
GACATCCGCG ACGCGCTGTC GACCTATATC ACCGACCCGA TCGTGTCGGT GATCGTCAAC
AATTTCTCGG GCACCTTCGC CCAGCAGATT CGCATCGTCG GCGCGGCGGA GAAGCCGGCG
ACGGTGTCGT ACCGGTCGGA CATGACGCTG CTCGACGCGA TGATCGCGGT CGGCGGGCTG
TCGCAATATG CGGCGGGGAA CCGGGCGAAG CTGATCCGCT ACGATCCGGT GACCAAGCAG
CAGCAGGAAT ATCGCCTGCG CATCGACAGC CTCTTGAAGC GGGGAGACAT CAAGGCGAAC
GTGAAGCTGC AACCGGGCGA TGTGATCATC ATCCCCGAAA GCGTGTTCTA G
|
|---|
| Protein sequence | MAFGAALKRL VAMLAAAMML AAMPAGAYAK DKELPSAPFV PDGGAPGEDY TIGPLDALTV
FVWRNPELGA QVQVRPDGRI TLPLINDMVA VGKTPAKLSD DIRDALSTYI TDPIVSVIVN
NFSGTFAQQI RIVGAAEKPA TVSYRSDMTL LDAMIAVGGL SQYAAGNRAK LIRYDPVTKQ
QQEYRLRIDS LLKRGDIKAN VKLQPGDVII IPESVF
|
|---|
| |