Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3886 |
Symbol | |
ID | 5200286 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 4274392 |
End bp | 4275183 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640583441 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001264369 |
Protein GI | 148556787 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTCGGC TTGACGGAAA AGTCGCGATC GTCACGGGAG GCGCCGCCTC GATCGGCGCG GCGATCGTGC GCAAGCTGCA CGCGGAAGGC GCGCGGGTGG CGATCGCCGC GCGCAGCGCC GGCAAGGGGG ACGCGCTGGC CGCGGAACTG GGCGACGGCG CGCTGTTCGT CCCCACCGAC ATCACCGACG ACGCGGCGCT CGCAAGGCTC GTCGCGCGAA CGGTCGACGC CTTCGGCCGG CTCGACATCG TCGTCAACAA TGCCTGCTCC TATGGCGACG ATGGCGCGGC CACGGCGCGC GGCACATGGC TCGACACGCT CAACGTCAAT GCCGTATCGG CCGCCATCCT CGGCGAGACT GCCCGCCCCC ATCTGAAGAC GGCGCGCGGC AACATCGTCA ACATCGGCTC GATCTCGGGC CGGTTCGCGC ATGTCGGCCG CTGGGCCTAT CCGGTGTCCA AGGCGGCGCT CGCCCATCTG ACGCGCGCGC AGGCGATGGA CTATGCGGCG GACGGCATCC GGGTGAACAT GGTCACGCTG GGGCATATCT GGTCTGACCC GTTCGACGGC CTGACCGGCG GCGATCGGGC GCATGCCGAC GACGTCGCGC GCGACCTCAA CCTGATCGGT CGCGTTGCCG ATGCGGGCGA AGTGGCGAAC GTCGTCGCCT TCGTCGCCTC CGACGCGGCG AGCTACATGA CCGGCAGCGA GACGTCGGTC GACGGCGGCT ACGGCATGAT GGGGCCGGAG CGCCGCGTGC CGTTGATGCC GCTGCTGTCG GGCCAGGCCT GA
|
Protein sequence | MARLDGKVAI VTGGAASIGA AIVRKLHAEG ARVAIAARSA GKGDALAAEL GDGALFVPTD ITDDAALARL VARTVDAFGR LDIVVNNACS YGDDGAATAR GTWLDTLNVN AVSAAILGET ARPHLKTARG NIVNIGSISG RFAHVGRWAY PVSKAALAHL TRAQAMDYAA DGIRVNMVTL GHIWSDPFDG LTGGDRAHAD DVARDLNLIG RVADAGEVAN VVAFVASDAA SYMTGSETSV DGGYGMMGPE RRVPLMPLLS GQA
|
| |