| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3857 |
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| Symbol | |
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| ID | 5197977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 4241980 |
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| End bp | 4244211 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640583412 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001264340 |
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| Protein GI | 148556758 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCAGA GGACCAAGGC CCTGCGGCTC CTCGCCGCCG CAACCGCCCT CACCACCGTC
GCGCTGCCGC AGGCCGGCTT CGCCCAGGCC ACGGAGACCG CCGCCGCCGA GGCGGCCGAC
GCCGGCGACA TGGGCGAGAT CGTCGTCACC GCCCGGCGCC GCGAGGAAAG CCTGATCGAC
GTGCCGATCT CGGTGTCGGC GATCAGCGGC GAGGCGCTGT CGCGCACCGG CGCGATCGAC
ATCACCACGC TGCAGGACAA GACCCCGAAC ATGACCCTGC AGGTCGCGCG CGGATCGAAC
AGCACGCTGA TCGCCTTCAT CCGCGGCATC GGCCAGCAGG ACCCGGTGTG GGGCTTCGAG
CCCGGCGTCG GCCTCTATGT CGACGACGTC TACATCGCCC GCCCGCAGGG CGCGGTGCTC
GACATCTTCG ACATCGACCG GGTCGAGGTG CTGCGCGGGC CGCAGGGCAC GCTCTACGGC
CGCAACACGA TCGGCGGCGC GATCAAGTAT GTCACCCGCC GCCTCGGCCA TGATTTCGAG
GCGAAGGTCC GCGCCTCCTA TGGCAGCTAC AACCAGCGCG AGATCGTCGC GTCGGTGACG
GTGCCGCTCA CCGACACCTT CTCGATCGGC GGCGCGGTCG CCTATTACAA GCGCGACGGC
TTCGGCAAGA ACCTGTTCAC CGGCGCCGAG CATTACAACA AGGACGTGCT CGCCGGCCGC
GTCTCGGCCG AATGGACGCC GACCGACCAG CTCTCGGTCC GCCTCGCCGC CGACGAGACC
CGCGACAATT CGAACCCGCG CCACGGCTAT CGCCTGCTGC CCAATGGCGG GCTGCCCGAT
TTCAACCCGA TCGGCGACGT CTACGACACC CGCGCGGGCG TCGGCGACGA CAACAAGGTC
GTGACCAAGG GCGTCTCGGG CACGATCGAA TATGAGGCGT CGGACCTGCT GACCCTCAAG
TCGATCACCG CCTATCGCAA GGGCCATACC GACACGGTGA TCGATTTCGA CGGCACGCCG
GGCCCGGTGC TCGACATCCC GTCCTTCTAC AAGGACCACC AGTTCACCCA GGAATTCCAG
GCGCTGCTGC AAAGCGACCG GGTGCAGGGC GTGTTCGGCC TCTATTATCT CAACGGCTCG
GCCTCGGGCG CGTTCGACAC GGTGATCGGC AACGCCAACC TGACGACGCT GACCTCGGGC
GACGTCGACA CCAAGTCCTA TGCCGCCTTC GCCGACGTCT CGGTCAAGCT CAGCGACCAG
TTCTCGGTCT CGGTCGGCGG CCGCTACACC AGCGACAAGC GCGAGGGCAC CGTGTTCCGC
GCCGACTATC TCGGCCTGCG CTCGCCGCTG TTCGGCCGGC CGACGGCGGT GCCGTTCCGC
ATCCGCACCG ACTACACCAA CAGCCGCACC GACAAGAAGT TCACGCCGCG CCTGTCGCTC
AGCTACAAGC CGGTCGAGGA CGTCAACCTC TATGCGTCCT GGTCGCGCGG CTACAAGTCG
GGCGGCTTCG ATCCGCGCGG CGACGCCATC TTCACGCCGG GCACCGTCGA CGGCTACAAG
CCCGAGACCG TCACCGCCTA TGAGGCCGGC ATGAAGGGCG CCTTCCTGAA CCGCACCCTG
TTCGTCAACG TCGCGGGCTT CTATTCCGAC TATAAGGACC AGCAGGTCAC GACCCAGTTC
CTGTCGGGCA CCACGGTCGT CTCGTCGGTC GACAATGTCG GCAAGTCGCG CATCTACGGC
TGGGAGCTCG AGCTGCGCGC CGTGCCCGAC CGCGATTTCC AGGTGCAGGC GTCGGTCGGC
TACACCAACG CCAAGTTCAA GGAGTTCCTG ACCCTCGATC CGCTGACCCT CAAGGTCCGC
GACTTCGCCG ACGAGCGGGT GTTCCAGAAC ACGCCGAAAT ACACCGCCAA CGTCTCGGCG
ACGCTGGGCC ATGATTTCGA CGGGCTCGGC CGCGTCACGA TCACCCCGGC GCTCTCCTTC
CGCAGCGGCT ATTCGCTGTT CGAGGTGCCG AACCCGGTGC TCGACCAGAA GGCCTATGAG
CTGGTCGACC TGTCGATCGT CTGGACCTCG CCCGACAAGC GCTTCTCGCT CTCCGGCCAT
GGCCGCAACC TGTTCGACCG CAAGTATCGC GTCGGCGGCT ATAATTTCCC GGGCGCGCTG
ACCGGCAATT CGGTGATCGG CTTCTACGGC CCGCCGCGCA CCTTCACCGT CACCGGCGAG
GTGCGTTTCT GA
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| Protein sequence | MIQRTKALRL LAAATALTTV ALPQAGFAQA TETAAAEAAD AGDMGEIVVT ARRREESLID
VPISVSAISG EALSRTGAID ITTLQDKTPN MTLQVARGSN STLIAFIRGI GQQDPVWGFE
PGVGLYVDDV YIARPQGAVL DIFDIDRVEV LRGPQGTLYG RNTIGGAIKY VTRRLGHDFE
AKVRASYGSY NQREIVASVT VPLTDTFSIG GAVAYYKRDG FGKNLFTGAE HYNKDVLAGR
VSAEWTPTDQ LSVRLAADET RDNSNPRHGY RLLPNGGLPD FNPIGDVYDT RAGVGDDNKV
VTKGVSGTIE YEASDLLTLK SITAYRKGHT DTVIDFDGTP GPVLDIPSFY KDHQFTQEFQ
ALLQSDRVQG VFGLYYLNGS ASGAFDTVIG NANLTTLTSG DVDTKSYAAF ADVSVKLSDQ
FSVSVGGRYT SDKREGTVFR ADYLGLRSPL FGRPTAVPFR IRTDYTNSRT DKKFTPRLSL
SYKPVEDVNL YASWSRGYKS GGFDPRGDAI FTPGTVDGYK PETVTAYEAG MKGAFLNRTL
FVNVAGFYSD YKDQQVTTQF LSGTTVVSSV DNVGKSRIYG WELELRAVPD RDFQVQASVG
YTNAKFKEFL TLDPLTLKVR DFADERVFQN TPKYTANVSA TLGHDFDGLG RVTITPALSF
RSGYSLFEVP NPVLDQKAYE LVDLSIVWTS PDKRFSLSGH GRNLFDRKYR VGGYNFPGAL
TGNSVIGFYG PPRTFTVTGE VRF
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