| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3808 |
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| Symbol | |
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| ID | 5197588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4180719 |
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| End bp | 4181693 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640583363 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_001264291 |
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| Protein GI | 148556709 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0201981 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTCGGC ATGCTCGACA TGGCCCGGCC GGACGCCTAC AGCCGCGCGC CATGCATGGC
TGGATCATCA TCGACAAGCC GCTTGGCCCG GGCTCGACCC AGATCGTCTC GGCGGTCAAG
CGCGCGCTCC GGACCGGCGG CTACGGCAAG GTCAAGGTCG GCCATGGCGG GACGCTCGAT
CCGCTGGCGT CGGGCGTGCT GCCCGTCGCG CTGGGCGAGG CGACCAAGTT GTCGGGGCGG
ATGCTCGACG CCGACAAGGC CTATGACTTC ACCATCGGCT TCGGGGTCGA GACCGACACG
CTCGACGCCG AGGGCAAGGC GGTGGCGGTG TCCGGCGTCT GCCCGACGCT CGACGCGATC
GAGGCGGTGC TGCCGCGCTT CACCGGAGCG ATCGAGCAGG TGCCGCCGGC CTATTCCGCG
CTGAAGATCG ACGGCCAGCG CGCCTATGAC CGCGCCCGCG CCGGGGAAAG CTTCGAGATG
AAGACGCGGG CGGTGACGAT CCATTCGCTC ACCATTCCGT CATCGTCCGA GCCCCTTCGC
GGCAATGAAG GCCTGAACGA GATCACCCTG TCTTGCTCGG TGTCGAAGGG CACCTACATA
AGGAGCCTGG CGCGGGACAT CGCGCGGGCG CTCGGCACGG TCGGCCATGT GACCATGCTC
CGCCGCACCA AGGCGGGGCC GTTCACCCTG TCCCAGGCGA TTTCGCTGGA CAAACTGGAT
GAACTCGCTA AGGGCCGGCA GCTTGAAAAA GCACTCTTGC CGCTGACGGC AGGGCTGGAC
GACATCCCGG CTCTATCCGT CACCCCCGAT CAGGCAAGGG CGCTCCGCGA GGGGCGCAGA
TTGATCGGGA TTGCCGCACC CACCGGCCTC AACCTTGCGA TCGACGGCGA CATGCCCGTT
GCGCTGGTCG AGGTCGAGGA CCGCGAGGTT CGCGTGGTGC GGGGCTTCAA TATGATGTCG
AAGGAAGACA GATGA
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| Protein sequence | MVRHARHGPA GRLQPRAMHG WIIIDKPLGP GSTQIVSAVK RALRTGGYGK VKVGHGGTLD
PLASGVLPVA LGEATKLSGR MLDADKAYDF TIGFGVETDT LDAEGKAVAV SGVCPTLDAI
EAVLPRFTGA IEQVPPAYSA LKIDGQRAYD RARAGESFEM KTRAVTIHSL TIPSSSEPLR
GNEGLNEITL SCSVSKGTYI RSLARDIARA LGTVGHVTML RRTKAGPFTL SQAISLDKLD
ELAKGRQLEK ALLPLTAGLD DIPALSVTPD QARALREGRR LIGIAAPTGL NLAIDGDMPV
ALVEVEDREV RVVRGFNMMS KEDR
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