| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3697 |
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| Symbol | |
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| ID | 5197360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 4060055 |
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| End bp | 4061440 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640583253 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_001264181 |
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| Protein GI | 148556599 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGACA CCGGCGTTAT CGACAATTTC CTCAACGTCT TCACCGGCTA CATCGACTCA
GGCTTCGGCC TGCTCGGCGG CGAGGTCGCG TTCCTCTCGA CAACGCTGAT CGCCATCGAC
GTGACGCTCG CCGGTCTGTT CTGGGCCTGG GGCGCGGACG AGGACGTGCT TCAGCGCCTC
GTCAAGAAAA CGCTCTACAT CGGCACCTTC GCTTTCATCA TCGGCAATTT CTCGCTGCTC
GCGACCATCG TGTTCGAGAG CTTCGCCGGG CTCGGCCTCC AGGCCAGCGG CGGGGCGATG
ACGATCGACG AGTTCATGAA GCCCGGCACG ATCGCGGCGA AGGGGCTCGA AGCCGCCAAG
CCGCTGCTCG ATGCGGCGGG GCAGTTCTCC AGCCTTTGGG CCGTGTTCTC GAACCTCGCG
CTGATCCTCG TGCTGCTGCT CGCCTGGGTG ATCGTGGTGC TCGCCTTCTT CATCATCGCC
GTGCAGGTCT TCATCACGCT GATCGAGTTC AAGCTGGTGA CGCTCGCCGG CTTCGTCCTG
CTGCCCTTCG CCTTCTTCAA CAAGACCGCC TTCATGGCCG AGAAGGTGCT GGGCCATGTC
GTCTCGACCG GCATCAAGGT GCTGGTGCTC GCCGTCATCA CCGGCATCGG CACCACGCTG
TTCAGCCAGT TCACCGGGGC GGCTCTCGGC CCCGCGCCCG ACATCAATCA GGTCATGGCC
ATCGCGCTCG CCGCGCTGTC GCTGCTGGGC CTGTCGATCT TCGGACCCGG CATTGCGAAC
GGCATCGTCT CGGGCGGGCC GCAGCTCGGC GCGGGTGCGG CGGCCGGGAC CGCGCTGGCC
GCAGGCGGCG CGCTGGTCGG TGGCGCGGCC GCCGCACGGC TTGGCGTCGG GACCGCCGGT
TCCGCCCTCG GCGCGGCCGG CCGGATGACC GGCGCCGCCG CGCGGGGCGG CGCTCAGATG
GCTGGCGGCG CGACCAGCGC CTACAGCCTC GGCTCGTTCG GCAAGAGCGG CGCGGGCGCT
GTCGCGGGCG GCATGGCCGC GGTCGGCCAG GCGGCGGCGG GCAGCGCGGC GAGCGCCGTC
CTTTCGCCGC TGCGCGCGGC GGCCGTCAAG GGCGGCGCGG CGATGAAGTC CAACTTCCGC
TCCGGCGCCC GCGCCGGGTT CACCGCCACC GGCGGCACGA TCACCGGCGG ACCCGCGCCC
GCCGCCCCGG CGGCCGCGCC CGCTGGCGGT TCCGCATCGG CGGGCTCGTC GGCCCAGCCT
GAATGGGCCG CCGCGATGAA ACGTCGCGAG GCCGTCAGCC ACGGCGCGAC CGTCCTCGCC
CACACCATGA AGGCTGGCGA CAGCCACGGC GGCGGCGCCG GTCCCGACAT CAAAGAGAAG
GACTGA
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| Protein sequence | MNDTGVIDNF LNVFTGYIDS GFGLLGGEVA FLSTTLIAID VTLAGLFWAW GADEDVLQRL
VKKTLYIGTF AFIIGNFSLL ATIVFESFAG LGLQASGGAM TIDEFMKPGT IAAKGLEAAK
PLLDAAGQFS SLWAVFSNLA LILVLLLAWV IVVLAFFIIA VQVFITLIEF KLVTLAGFVL
LPFAFFNKTA FMAEKVLGHV VSTGIKVLVL AVITGIGTTL FSQFTGAALG PAPDINQVMA
IALAALSLLG LSIFGPGIAN GIVSGGPQLG AGAAAGTALA AGGALVGGAA AARLGVGTAG
SALGAAGRMT GAAARGGAQM AGGATSAYSL GSFGKSGAGA VAGGMAAVGQ AAAGSAASAV
LSPLRAAAVK GGAAMKSNFR SGARAGFTAT GGTITGGPAP AAPAAAPAGG SASAGSSAQP
EWAAAMKRRE AVSHGATVLA HTMKAGDSHG GGAGPDIKEK D
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