| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3621 |
|---|
| Symbol | |
|---|
| ID | 5198981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3979605 |
|---|
| End bp | 3980411 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640583176 |
|---|
| Product | regulatory protein, IclR |
|---|
| Protein accession | YP_001264105 |
|---|
| Protein GI | 148556523 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.685113 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGG TGGTTCCGGG CCGCGGCAAG AATCCGTCCG AACGCGGGAC GGTGAAGTCG
TGCGACAGGA CGATCGACGT CCTCGAATAT TTCGCGTCGG TGCAGGGGCC GGTGCGGACC
AGCGAGGTGA GCGGCGCGCT CGGCCTGCCC AACAGCAGCA TCGACGACAT ATTGCGGACC
TTCGCGGCGC GCGGCTACCT GACCTTCAAC CGGCTGTCGA AGACCTATCA GCCGTCCTAC
AAGATCGTCG GCACCGCCCG CGCGATCGAA CGCTCCTATT TCGGCGACGG GCGGACGGCG
GCGCTGATGC GCGAGCTGCG CGACGAGACG GGCGCCACCG TCTACATGAC CGCCCAGAAC
GACTGCTGGC TGGAGACGGT CGGCGCGGTC GAGGGCTCCT GGCATTTCGA CGGCGCGACG
ATCGATTATC GCCGCACGCT GGTCCACTAC GACGATGGCG GCTGGCGGCC CGCGACCAAT
TTCGCCGGCA TCCTGCTGGC CAGCCAGTCC AATGTCGACG TGATGGACGT CGCCGGGCGC
AGCCAGAAGA TCGGCATCGC CGCGCGCGGC GCGCCGACGA TGGGCAAGCT GATCGAGCGG
GTCGGCCGCA TCCGCGCGCA AGGCTATGCG CTGTGCCGGC GCAACGACAC GGTCGCGGTC
GAATCGATCG CCTGTCCGCT GCCGTCGGGC AGCAACGTGC CGGTCGCGAT CGGCCTGATC
GGCCATGATC TCAACCTGCG CGACGAGGCC CGGACCCGGC GCCTCGCCAT GGGCCTGCGC
CAGACGATCG CGCGCTACTG CAATTAG
|
|---|
| Protein sequence | MAKVVPGRGK NPSERGTVKS CDRTIDVLEY FASVQGPVRT SEVSGALGLP NSSIDDILRT
FAARGYLTFN RLSKTYQPSY KIVGTARAIE RSYFGDGRTA ALMRELRDET GATVYMTAQN
DCWLETVGAV EGSWHFDGAT IDYRRTLVHY DDGGWRPATN FAGILLASQS NVDVMDVAGR
SQKIGIAARG APTMGKLIER VGRIRAQGYA LCRRNDTVAV ESIACPLPSG SNVPVAIGLI
GHDLNLRDEA RTRRLAMGLR QTIARYCN
|
|---|
| |