| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3406 |
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| Symbol | |
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| ID | 5197827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 3737106 |
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| End bp | 3739274 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640582953 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001263890 |
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| Protein GI | 148556308 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0595288 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGGA AGTTCAGCTT GATGTGCGCG ACGGCGCTGA CGATGGCGGC CGCCACGGGT
GCGCAGGCGC AGGTGTCTGC GCCGAACGCC GCCGCGGATG CCGGCAGCGG CGGCCTGGAA
GATATTGTCG TCATTGCCCA GAAGCGGTCC GAAAATCTTC AGAACGTCCC TATCGCGGTT
TCAGCGGTAA CCGGTGCCGA TCTCCAGACC CGGCGCGTCA CGGATGTGCT CGACCTCAGA
CTGGCGGTGC CCAGCCTCAA CATCACCAAC AGCAACGGCA ATGTCAGCAC CAATCTGCGC
GGACTTGGCA GCACGGCCGT CAATGCGGGC TATGAAAACA CCACCGCCTT CTATGTCGAC
GGTGTTTATC TCGCCTCGCA GCAGGCGACG TTCCTCGGGC TCAGCAATGT GGCGCAGATC
GAGGTGTTGA AGGGCCCCCA GGGAACCCTG TTCGGGCGCA ATGCGACAGC TGGCCTGATC
CAGATAACGA CACGGACTCC GGGCGATACG CCTACCGTCG AAGGGCGGCT GTCCTACGGC
AATTACGGCA CGATCGAGGG CGCCTTCTAT GCCGCGACGC CGGTTGCGAC GGGTGTCGCC
GCCGACATCT CCTTTTACGG GACGCATATG GCCGACGGCT GGGGGCGCAA TCGCACCCGC
AATGTCGATT CCTATGTGGT CGATCATAAT ATCATGGTGC GATCGAAATG GGTTTTCGAT
CCTACCGAAG GCACCAAGGT GACGCTGATC GGCGACTATA GCGACAGCAG CGACACCGCG
ACGTCGAAGG CGGCGCTGCG CGGCACCGTC AATCCCTTCT ACCGAAGCGA GGGCCCGGCG
CCCGACCTTG GCTATGACAC GGTCAACAAT TCCCCCGATG TCCGGAGCGG CTGGTCGGCA
GGCGGCAGCC TCAAGGTCGA GCAGGAGATC GCATCACTGA CGCTGATGAG CCTCACCGCT
TATCGCAAGT CGCGCTATGC GATCGGGTTC GACTATGACC AGGGACCGAG CAATCTTGCC
GAAGTCACGT TCGTTCAGCC GGATCGGCAA TTCTCGCAGG AACTGCAGCT GCAATCCGGC
ACGGGCGGCC CGCTGACCTG GACGGTCGGC GCTTATTATT TCAACGCAAA ATCAGCTTAT
GACCCGTTTC ATCTCAATCT TTATGCCGCT GGCAGCCTCA TCACCATTTC CAACCATCAG
AAAACCGAAT CGATCGCTGG ATTTGCGCAA GCCACCTATG AAGTGGCACA CGATACCAAC
CTGACGCTCG GCGGACGCTA CACCTGGGAA AAGCGTACCG CCTATGACGG GACCACGTCC
GTCTTCCTGA TCGGACCGGG CACGACCTTG CCGACCGTCG CGGCGCCGGA CCGCAAGGCG
GATTTCAACA AGTTCACCTT CCGCGTCTCG CTCGACCATC GCTTCTCGCA GCAACTGCTC
GGCTATGCCT CGTTCAACCG AGGCTTCAAG AGCGGGGGGT TCAATACAGG GACGCCGAAC
AGCGCGCCCT ATCTGCCGGA ATCGATCGAT GCCTATGAAA TCGGCTTCAA ATCCGATCTG
GCCGATCGCC ATCTGCGTAT CAACGCCGCT GCTTATTATT ATGACTATAC CAATATTCAG
GCGCAACGCC TGGCCTCGGG CGTGATCCAG ATCGTCAATG CCGCGTCGGC GAGAATCTAT
GGCGTCGATG TCGATTTCGA GGCCTTGTTG ACCCACGGCT TCACCCTCTC CGGCGGGTTC
AACCTCGGCA GCTCCAAATT CAAATCCTAT CCCGGCGCCC TGATCGGCAA CATCGATGGC
CTGCCGTCGG TCGTCGGCGA TGCGGACGGC AATTACCTGC CCAATGCATC GAAGCTCACC
TTCAACCTGG CCGCCAACTA TGCGGTGGAT TTCCGGGGCG GAAAGATCAA CCTCAACGCC
AATCTCTATT ATAATGACGG CTATTATCTG GAAGCCGACA ACAAGACGCG CCAGCATGGC
TATGCGCAGC TCGGTGCCGC CATCAACTGG ACCAGCCCCG ACGATCATTT CACCGTCGGC
CTGTTCGGCA AGAACCTGAC GGACCGACGC GTGCTCAACT ATTCGTCGAC CGTCGCCAGC
AACGGCATGC ATGTGGGGCT GTACGGACCG CCGCGAACCT ACGGCGTCAA CGCCGGGTTC
AAATTCTAG
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| Protein sequence | MARKFSLMCA TALTMAAATG AQAQVSAPNA AADAGSGGLE DIVVIAQKRS ENLQNVPIAV
SAVTGADLQT RRVTDVLDLR LAVPSLNITN SNGNVSTNLR GLGSTAVNAG YENTTAFYVD
GVYLASQQAT FLGLSNVAQI EVLKGPQGTL FGRNATAGLI QITTRTPGDT PTVEGRLSYG
NYGTIEGAFY AATPVATGVA ADISFYGTHM ADGWGRNRTR NVDSYVVDHN IMVRSKWVFD
PTEGTKVTLI GDYSDSSDTA TSKAALRGTV NPFYRSEGPA PDLGYDTVNN SPDVRSGWSA
GGSLKVEQEI ASLTLMSLTA YRKSRYAIGF DYDQGPSNLA EVTFVQPDRQ FSQELQLQSG
TGGPLTWTVG AYYFNAKSAY DPFHLNLYAA GSLITISNHQ KTESIAGFAQ ATYEVAHDTN
LTLGGRYTWE KRTAYDGTTS VFLIGPGTTL PTVAAPDRKA DFNKFTFRVS LDHRFSQQLL
GYASFNRGFK SGGFNTGTPN SAPYLPESID AYEIGFKSDL ADRHLRINAA AYYYDYTNIQ
AQRLASGVIQ IVNAASARIY GVDVDFEALL THGFTLSGGF NLGSSKFKSY PGALIGNIDG
LPSVVGDADG NYLPNASKLT FNLAANYAVD FRGGKINLNA NLYYNDGYYL EADNKTRQHG
YAQLGAAINW TSPDDHFTVG LFGKNLTDRR VLNYSSTVAS NGMHVGLYGP PRTYGVNAGF
KF
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