| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3294 |
|---|
| Symbol | |
|---|
| ID | 5198548 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3623724 |
|---|
| End bp | 3624473 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640582839 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001263778 |
|---|
| Protein GI | 148556196 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.186912 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGGC TGCTCGAGAA CCGGATCGCC TTCGTCACCG GCGGCGCCGG CGGCATCGGC
GCGGCGACCG CGATCGCCTT CGCCGCCGAG GGCGCGAAGG TGGCGGTCGC CGATCTCAAG
GACCCCGAGG ACACCGTCCG CGCGATCCGC GACGCGGGCG GCGAGGCCTA TGCGCTGTCG
CTCGACGTGA CCGACCAGGC GGCGGTCGAC GCCGCGGTCG ACGGCGTCGT CGCGAAATGG
GGCCGGCTCG ACATCGCCTT CAACAATGCC GGCGTGTCGC TGGAGGACTA CACGACCCCC
TGGGAATCGG TCGAGCTGTA CGACAGGGTC GTCGCCGTGA ACCAGCGCGG CGTGATGCTG
TGCATGGCGG CCGAGCTGCG CCACATGGCG CCGCAGAAGT CGGGATCGAT CATCAACACC
GCCTCGGTCG CCGGCATGGT CGGCCTGTCG GGCGCGGGCT ATTGCGGCAG CAAGCACGCC
GTGGTCGGCA TCACCCGATC GGCGGCGATG CGCTACGCGG CCGAGGGCAT CCGCGTGAAC
TGCGTCTGCC CCGGCGCGAT CGCCACGCCG ATGACCGAGA ATGAGGCGAT GAGCGAGGAT
GCGCGCGCCT TCATGGCGCA GATGCACCCG ATGAACCGCA TCGGCCGCGC CGAGGAGATC
GCCGACGGCG TCGTCTTCCT GGCGTCGGAC AAGGCCAGCT TCATCACCGG CCACCCGCTC
GCGATCGACG GCGGCTTCCT GGCGCGCTGA
|
|---|
| Protein sequence | MARLLENRIA FVTGGAGGIG AATAIAFAAE GAKVAVADLK DPEDTVRAIR DAGGEAYALS
LDVTDQAAVD AAVDGVVAKW GRLDIAFNNA GVSLEDYTTP WESVELYDRV VAVNQRGVML
CMAAELRHMA PQKSGSIINT ASVAGMVGLS GAGYCGSKHA VVGITRSAAM RYAAEGIRVN
CVCPGAIATP MTENEAMSED ARAFMAQMHP MNRIGRAEEI ADGVVFLASD KASFITGHPL
AIDGGFLAR
|
|---|
| |