Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_3168 |
Symbol | |
ID | 5199487 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 3479644 |
End bp | 3480543 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640582715 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001263654 |
Protein GI | 148556072 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.279775 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.690757 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCATC GACACAATCT CGCCCGCTCG CTCGTCACGC TGCTGGTCAT CCTCGTCATC CTGGCGGGGA TCTACGCGCT GTGGCTGCGC TACCAGGTCG AGCCGGTCAC CCGCGACGGC AAGGTGCGCG CCGACATGGT GCCGGTCGCC GCCGACGTCG CCGGCCTCGT CACCGAGGTC CGGGTCGCCG ACAACCAGCC GGTGCGCAAG GGCGACGTGC TGTTCGTCAT CGATCGGCCG CGCTACCGCC TCGCGCTCGA ACAGGCCGAG GCCGACCTCG CCAGCCGGCG GGTCGCGCTG GCGCAGGCGA TCCGCGAGGA CCGGCGCAAT CGCGCGATGC CCGAGGTGAT CGCCGCCGAG ACGATCGAGC AGGGCCGCGC GCGGGTCGAG GAGCTGCGAT CGGCGGCGGG CCAGGCGGCG GCGGCGCGCG ACCTCGCCCG CTTCAACCTC GGCCGGACGC TGGTCCGCGC GCCGGTCGAC GGCGTCATCT CGAACGTCTC GCTCCAGCCC GGCGTCTACC TGATGGCGGG GCGGCCCGCG CTCGCGCTGG TCTACAACCG GTCGATGCGG GTCGAGGGCT ATTTCGAGGA GACCAAATTG CCGGCGATCC GGGTCGGCGA TCCGGCGAGC ATCTATCTGA TGGGCGTCGC CGACGAGATC AGGGGCCATG TCCAGAGCAT CGCCGGCGGC GTCGAGGATC GCGAGCGGGC GGGCAGCGAC GGCCAGCTCG CCAACGTCAA CCCGACCTTC ACCTGGGTCC GGCTGGCCCA GCGCATCCCG GTGCGGATCG CGATCGACCG CGTCCCCGCC AATGTCCGGA TGATCCCCGG CCAGACCGCC ACCGTCGTCG TCCACCCGCG CGACGACGGG CGCAGCGTCC ACCGGAGCCT GCCATGGTGA
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Protein sequence | MLHRHNLARS LVTLLVILVI LAGIYALWLR YQVEPVTRDG KVRADMVPVA ADVAGLVTEV RVADNQPVRK GDVLFVIDRP RYRLALEQAE ADLASRRVAL AQAIREDRRN RAMPEVIAAE TIEQGRARVE ELRSAAGQAA AARDLARFNL GRTLVRAPVD GVISNVSLQP GVYLMAGRPA LALVYNRSMR VEGYFEETKL PAIRVGDPAS IYLMGVADEI RGHVQSIAGG VEDRERAGSD GQLANVNPTF TWVRLAQRIP VRIAIDRVPA NVRMIPGQTA TVVVHPRDDG RSVHRSLPW
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