| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2928 |
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| Symbol | dapF |
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| ID | 5199935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 3216664 |
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| End bp | 3217488 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 640582478 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001263418 |
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| Protein GI | 148555836 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.276892 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGTCC GCTTTCACAA GATGCACGGT CTCGGCAATG ATTTCGTCGT GATCGATGCC
CGCGCCACCG CGCCGGTCGA GATGACCGCG GCGCGCGCGC GGGCGCTTGC CGACCGCAAG
ACCGGGGTGG GCTGCGACCA GCTCATCCTG CTCGAACCGT CCGCCGTCGC CGACGCGCGG
ATGCGGATCT TCAACGCCGA CGGCAGCGAG GTCGAGGCGT GCGGCAACGC CACACGCTGC
GTCGTCAGCC TGCTCGGCGG CAGCGCGCGG ATCGAGACGG TCGCCGGGCT GCTCGAAGGC
CGCAGCGCCG ACGGGCAGGT GTCGGTCGAG CTCGGCGAGC CGCGCTTCGA CTGGGACGCG
ATCCCGCTCG CCTATGCGAT GGACACCCGC GCGATGCCGG TCGCCTGGGA GGAGCTCGAG
GCGCCGATGG CCGCCAATGT CGGCAATCCG CACGTCGTCT TCTTCGTGCC CGAGACCGAC
GCGGTCGCGC TCGACCGGCT CGGGCCGCGG ATCGAGACCG ATCCGCTGTT CCCCGCGCGG
ATCAACGTCA ACGTCGCGAC GGTCGACGAC CGGGCGAACA TCCGCCTGCG CGTGTGGGAG
CGCGGCGTCG GCCTGACCGA CGCCTGCGGC ACCGGCGCCT GCGCGACGGC GGTGTCGGCG
ATCCGCGCCG GGCTGGTCGA CTCGCCGGTG CGGGTGACGC TGCCCGGCGG GCCGCTGACG
ATCGACTGGG CGCCCGGCCG GCCCATCGTC ATGACCGGCC CCGCCACCCA TGTCTTCACC
GCCGAGACCG ACCTGAGCGC CTTCGGGGCC GACAGCCGCG GATGA
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| Protein sequence | MQVRFHKMHG LGNDFVVIDA RATAPVEMTA ARARALADRK TGVGCDQLIL LEPSAVADAR
MRIFNADGSE VEACGNATRC VVSLLGGSAR IETVAGLLEG RSADGQVSVE LGEPRFDWDA
IPLAYAMDTR AMPVAWEELE APMAANVGNP HVVFFVPETD AVALDRLGPR IETDPLFPAR
INVNVATVDD RANIRLRVWE RGVGLTDACG TGACATAVSA IRAGLVDSPV RVTLPGGPLT
IDWAPGRPIV MTGPATHVFT AETDLSAFGA DSRG
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