| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2417 |
|---|
| Symbol | |
|---|
| ID | 5197442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 2686983 |
|---|
| End bp | 2688476 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640581963 |
|---|
| Product | peptidase S10, serine carboxypeptidase |
|---|
| Protein accession | YP_001262914 |
|---|
| Protein GI | 148555332 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2939] Carboxypeptidase C (cathepsin A) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0660734 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0714055 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGATTG ATCGCACGCT GATCGCACTG GCCCTCGCGT TCGCCGCGCT TCCGGCCAAC
GCCGCGCCCG CTCCGGCCGC CACCGCCGAA GCGGCGCAGC CGCGCATCTT CCGGTCTGAG
GGGCAGGGCG ACTTCGGCGG CGGCCGCCTG CGCTATGCGG CGGCGGTCGA GGAAGTGCTG
CTGCCGGGCG CCAGCATCTT CGTCACCTCC TATGTCCGCA GCGACGTCAG GGACGCGGGC
AGCCGCCCGG TGATCTTCGC GTTCAACGGC GGGCCGGGAT CGGCGTCGCT CTGGCTGCAT
CTGGGGATGA TGGGCCCACG CCGGGTCGAT TTCGACGACC CGACCCGGCC GCGCACCGTC
GCGCCCTTCG CCACGGCCGC CAATCCGGAC AGCCCGCTCG ACGTCGCCGA CATCGTCCTG
ATCGATCCGC CGGGCACCGG CTACAGCCGC ATCCTGCCGG GCGGCAAGCC CGAGCAGTTC
TACGGCGTCG AGCAGGACGC GCGGGCGATG GTCCAGGTCG TCGAGCAATG GCTCCGCCGC
CACGGCCGCC TCAATTCGCC CAAATATCTC GTCTCGGAAA GCTACGGCAC GGTCCGCGCC
GCCGTGATGG CGCGGCTGAT GGCGGGCGGG CCGACCCAGA CCGGATCGAT GGACGGGCTG
ACGCTCAACG GCGTCGTCCT GCTCGGCCAG GCGATGGACA TGGCGCGCGG CGCCGAGGGC
GACGACCGCG CCTATCTCGC CATCCTGCCC TCGCTGGCCG CGACCGCCTG CCACTTCGGC
AAGGCCGCGC CCGGCTGCAC GCCCGAGGGG CAGGTCGCGG CGGCCAGGCG CTTCATCGAG
ACGAGCTATC TCGCCGCGCT CCACGCCGGC TCCCACCTGC CCGCCGACCG CAAGGCAGCG
GTCGCGCGCG AGATGGCGGC GCTGATCGGC CTGCCAGAGA AGGATATCCT CGCCGCCGAC
CTGCGCATCT CGGGCGCGGC CTTCGCGAGG CTGCTGCTCG CCGGCGAGGG CCGGCGCATC
GGCCTGTACG ACGCGCGCTT CGTGCTGCCG TCGCAGGGCG CGGGCGGCGA TCCGGTCGCC
GACGATCCGG CGATGGGCCA ATATGTGCCG GGCTTCGTCG GCGCGTGGAG CGACTATGCG
GCGAAGACGC TCAAGGTCGA TCTCGACATC CCCTATGAGC CGATCGCCTT CCGCGACGTC
AACGGCCGCT GGGATTATGG TTTCGGCGCC GGCGTCCCGG TGGGGAAGAA TTATGCGGTC
GACCTCGCCG TGGCGATGAG CCGCAACCCG GCGATGCGGC TGATGGTCGG CACCGGCTAT
TACGACCTCG TCACCCCGCT CGGCAGCGCC GACTATGTGG TCGCCCATGC CGGCATCCCG
CTCGCCCGGA CCAGCTTCCA CGGCTATCCG TCGGGCCACG GCCCCTATCT GGGGGCCGAG
GCGCGCACCG CGCTGGCCCG CGACCTCCGC GCCTTTATGA GCGCGCCCAA GTGA
|
|---|
| Protein sequence | MRIDRTLIAL ALAFAALPAN AAPAPAATAE AAQPRIFRSE GQGDFGGGRL RYAAAVEEVL
LPGASIFVTS YVRSDVRDAG SRPVIFAFNG GPGSASLWLH LGMMGPRRVD FDDPTRPRTV
APFATAANPD SPLDVADIVL IDPPGTGYSR ILPGGKPEQF YGVEQDARAM VQVVEQWLRR
HGRLNSPKYL VSESYGTVRA AVMARLMAGG PTQTGSMDGL TLNGVVLLGQ AMDMARGAEG
DDRAYLAILP SLAATACHFG KAAPGCTPEG QVAAARRFIE TSYLAALHAG SHLPADRKAA
VAREMAALIG LPEKDILAAD LRISGAAFAR LLLAGEGRRI GLYDARFVLP SQGAGGDPVA
DDPAMGQYVP GFVGAWSDYA AKTLKVDLDI PYEPIAFRDV NGRWDYGFGA GVPVGKNYAV
DLAVAMSRNP AMRLMVGTGY YDLVTPLGSA DYVVAHAGIP LARTSFHGYP SGHGPYLGAE
ARTALARDLR AFMSAPK
|
|---|
| |