Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2407 |
Symbol | |
ID | 5196949 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 2674916 |
End bp | 2676721 |
Gene Length | 1806 bp |
Protein Length | 601 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640581953 |
Product | lipopolysaccharide biosynthesis protein |
Protein accession | YP_001262904 |
Protein GI | 148555322 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.3542 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCATGCC GGCGTGAAGG ACCAGTTCTG CTTCTTCGGC GACCGGTCGG TCAGCGCCTC GGGCGCGGGC GGCACGGTCG AGCAGACCCA GCTCGGCGTC AACTATCGCC GCCAGATGAC CGAGCGGGTC GGCGTGAGCT GGACCGGCAG CTATGTGCGC AGCAAGTCGC AGTCGACGCT GCTCGGCGGC ACGCGGCAGT TCGTCACCGG CGTCGCCGGC GTCGACTGGC GGGTGTTCCG CAGCCTCACC GTCGGGGCCC AGGGCCGCTA TCGCGACGTC TATGGCGCGG GTCTCCCGAT CAAGGCCGAC ATCGGCGGAG AAGTCTTCGC CCGGCTGCAG CTGACGGGCC GCTGATGAGC GATCCGGTCG ATCCGATCGG CGACGTCGAG CTCGCGGACG GCCTGCTGGC CTATCTGCCG CAGATCCTCG TCCAGCGCCG CTGGCTCGTG CTGATCCCGT TCATCGTCTG CGCGGGGACG GGCATCGGCC TCGCCTACGG CCTGCCCGCG CATTACCAGT CCTCCGCCAC CGTCGTCGTC GAATCGAAGG AACTGCCCGA GGCGATCGCC GCCGCGACGG TCAACGACCT GATCGACCAG CGGATCGCCC GCATCAAGCA GCAGATATTG AGCCGCCCGG GCCTGATCGA GCTGATCCAG CAGAACGACC TCTACCGGTC GCAGCGCCGC TCCAGCTCGC TCTCCGCGAT CATCGACATG ATGCGCGACG CGACCGCGAT CACGCCGGTG ACGGCGGGCA TCGACAAGCT CGCCGAACGG CGCGGCACGT CGAACACCAT CGCCTTCTCG GTCGCCTTCA CCTATTCGGA CCCGGCCAAG GCGCAGGCGG TGACGCAGCA GTTCACCGAA AGGCTGCTCA AGCTCGACAG CACCCAGCTC GCGGCGCAGG CCGACGCCAC CGTCGGCTTC CTGCGCGACC AGGCCGGCCA GATCCAGAGC CAGATCGGCG AGATCGAGGG CAAGATCGGC GAGATCAAGG CGCGCAACGG GCTGGCGCTG TCGCGGATCG GCGGCTTCAT CCCGTCGACC GCCAATTACG ACGTGCAGAT ATCGCAGCTC CAGCGCGAGA ATGGCGAGCT GCAGGCCCGG CTCAACAGCG GCAGCACCAA CGCCGACGAG CGCGTGTCGC AGGCCGAGGC GGGGCTCGCC TCCGCCCAGG CGCTCTATTC GGACAACCAT CCCGACGTGA TCGCCGCGCG GCAGCGACTG ACCGAGGCGC GCGCGGCGGC CAAGGCCAAT ACCGGCCCAC GCAACAACCC GGCGGTCATG GCGCAGATCG CCGCGAACAA CCGCACCATC GCCTCGCTCA ACAGCGCCAA GTCGGCCGAC ATGTCGCGGG CCAGCGCCGC CGTCTCGGCG CAGAGCGCCG CGCCGGTGAT CGAGGAGAGC ATCCGCCAGC TCGAGGCCAA GGCCGACGGC CTGCGGTCGA ACTACGATCG CCTGTCGGGC AATCTTCTGG CGGCCGAGGC GGCGCAGAAG ATGGCGGCCG AGCAGCGCGG CGAACGGCTG GTGCTGGTCG ATCCGCCGAC CCTGCCCGAC GAACCCAATT CGCCCAATCG CGGGCTGCTG ATCATCGGCG GCTTCGCGGT CGGCATCACC GTCGGCCTCG CCCTGGCGCT GCTCGTCGAG CTGCTGCGCC GTCCGATTCG CGGCGCGGGC ACGCTGCAGT CGCTGCTCGG GGTCGGCCCG CTGGTGGTGA TCCCGACCCT CAAGTCGAAG CAGCGCGGCA AGGCCCGCCG GCGCAAGGGC GGCTTCCTGT GGCGCCGCCG GGCGGCCCGG ACATGA
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Protein sequence | MPCRREGPVL LLRRPVGQRL GRGRHGRADP ARRQLSPPDD RAGRRELDRQ LCAQQVAVDA ARRHAAVRHR RRRRRLAGVP QPHRRGPGPL SRRLWRGSPD QGRHRRRSLR PAAADGPLMS DPVDPIGDVE LADGLLAYLP QILVQRRWLV LIPFIVCAGT GIGLAYGLPA HYQSSATVVV ESKELPEAIA AATVNDLIDQ RIARIKQQIL SRPGLIELIQ QNDLYRSQRR SSSLSAIIDM MRDATAITPV TAGIDKLAER RGTSNTIAFS VAFTYSDPAK AQAVTQQFTE RLLKLDSTQL AAQADATVGF LRDQAGQIQS QIGEIEGKIG EIKARNGLAL SRIGGFIPST ANYDVQISQL QRENGELQAR LNSGSTNADE RVSQAEAGLA SAQALYSDNH PDVIAARQRL TEARAAAKAN TGPRNNPAVM AQIAANNRTI ASLNSAKSAD MSRASAAVSA QSAAPVIEES IRQLEAKADG LRSNYDRLSG NLLAAEAAQK MAAEQRGERL VLVDPPTLPD EPNSPNRGLL IIGGFAVGIT VGLALALLVE LLRRPIRGAG TLQSLLGVGP LVVIPTLKSK QRGKARRRKG GFLWRRRAAR T
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