| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_2301 |
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| Symbol | |
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| ID | 5198365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 2559528 |
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| End bp | 2561720 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640581847 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001262798 |
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| Protein GI | 148555216 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00156441 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000705013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCGACTAT ATCACCTGTT CGCCGCCGCC GCCGTCGCGG CCATTGCCAC CGGTTCCGCC
CAGGCCCAGA CGGCGCCCGC CGCCGACGCC GACAATATCG GCCTGGAGGA GATCGTCGTC
ACCGCGCAGA AGCGCAGCGA GAAGCTCCAG GACATCCCGG TGACCGTCAC CGCGCTGGGC
GCCGAGGCGC TCGAACGGCG GCAGGTGCTC TCGGTCTCCG ACCTCCAGTC GATCGCGCCC
GGCGTGTCGG TCGGCCAGCA TGCCGGCTAC AACCGGCTGT TCATCCGCGG CATCGGCCTG
ACCTCGATCT CCTCGGGCCA GGACCCGAGC GTCTCCTTCC AGGTCGACGG CGTCGTCATC
GGCCGGCCCT CGGCGCAGCT CGCCTCCTTC TTCGACCTCG AACGGGTCGA GGTGCTGCGC
GGCCCGCAGG GCACGCTCTA CGGCCGCAAC GCGACCGGCG GCAGCGTCAA CCTGATCACC
CGCAAGCCGA CCCGCGACCT CAGCGGCTAT CTCGACCTGA CCTACGGCAA TTACGACCGC
ATCCAGCTCG ACGGCGCGAT CAGCGGGCCG CTCGATGGCA AGGGCGACGT CCGCGCCCGC
ATCGCCTTCC AGAAGGTCAA GCATGACGGC TATGGCCGCA ACGTGACCCT CAACGAGGAC
GTCAGCGACC AGGACAGCTG GGCGGTGCGC GGCATCCTCC AGGTCGATCC CGCCGCCAAT
GTCGATATCA CCCTCTCCGC CGACTATGCG CGCGAGGACG ACCATAATTA TCCGTTCAAC
GGCTTCGGTC CCTATCGCTC CGACGTGCCG ATGCCGGGCC TGCTGCTCGG CGGCACGCTG
CTGCCCAACA GCCGCGACGT GACGACCGAG GTGCCGACCC GCAACGACCG CACCTTCTGG
GGCCTGTCGG GCACGATCGG CGTCGATCTG GGTGGGGGCC TGCGCTTCCA GTCGATCACC
GGCTATCGCA AGTCGCGCCG CGCCAACATC AACGATCCCG AGACGACCTC CTATGCGGTG
TTCTCGCCGA CCCTGACGGC GGAGAACGCC CGGCAATTCT CGCAGGAGCT CCAGCTCCTC
TACACCAGCG ACCGGCTCAA CGGCGTCGCC GGCCTGTTCT ACTATGACGA ATCGCTCAAG
GCGGAGCTCG ACCTCGGCTT CCCGGTGATC GGCGCCGCCC TCGGCTTCCC GGCCGCTGAC
TATCATGAGG ACGGCACGAT CGACATCAAG GCCTATGCGG CCTTCACCCA GTGGACCTAT
GAGGTGGTCG ACCATCTCCG GCTGACCGCC GGCGTCCGCT ACAGCGACGA GAAGCGCCGC
TCGAACGGCA CCTTCACCAT CTTCAGCTTC ATGCCGCCGC CGAACGCCGC CAACGTCGTC
GTGCCCGTCC ATGTCGACAA GAGCTGGCAC GCGCTGACGC CGAAGTTCAG CATCGACTAC
AAGCCGGTCG AGAATGTGAT GCTCTATGCG TCGGCGACGC GCGGCTTCAA GAGCGGCGTG
CTGCTGAGCG GCAACCCCAA TCCGCCGGTC AATCCCGAAT ATATCTGGTC CTATGAGGCG
GGCATCAAGT CGAGCTTCCT CGACAACCGG GTCCAGCTCA ACGCCGCGGC CTTCTACTAC
GACTTCAAGG ACCTGCAGGT TAACCGGATC ATCAACGTCT CGATCGTCAC CGAGAATGCG
GCGGCGGCGC GGGTCAAGGG GGCCGAGGTC GAGCTGCGGG CGCGGCCGGT CGAGGGCGTC
ACGCTCAACG CCGACGCCAC CTATCTCGAC GCCACCTTCC GCAAATACAG CACCAAGCAT
CCGGCCCGTC CCGAACTCGG CCTGCTCGAC CTGTCGGGCA ACCGGCTCGC CAACGCGCCG
AAATGGTCGC TCAACGCGGG CGCGGAGTTC GACCTGCCGA TCGGCGTGCC CGGCCGGCTG
TCGGCGCGCG GCGACGTCGC CTGGACCGGC AAGGTCTATT TCACCGAGTT CAACGAGAAT
CTCCTCTCGC AGGACGCGGT GGCGACGGTC GACGCCTCGC TGCAATATGA GAGCGAAGAC
GGCCACTGGC GCGCCAGCCT GTTCGGCAAG AACCTGACCA ACCGCAAGAT CGTGGCGAAC
AAGTTCATCG CCGCGCAGAC GACCGGCTTC GCGCTCAATG GCGGCTTCAA GCCGCCGCGC
ACCTACGGCC TGCGGGTCGG CTACCGGCTG TAG
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| Protein sequence | MRLYHLFAAA AVAAIATGSA QAQTAPAADA DNIGLEEIVV TAQKRSEKLQ DIPVTVTALG
AEALERRQVL SVSDLQSIAP GVSVGQHAGY NRLFIRGIGL TSISSGQDPS VSFQVDGVVI
GRPSAQLASF FDLERVEVLR GPQGTLYGRN ATGGSVNLIT RKPTRDLSGY LDLTYGNYDR
IQLDGAISGP LDGKGDVRAR IAFQKVKHDG YGRNVTLNED VSDQDSWAVR GILQVDPAAN
VDITLSADYA REDDHNYPFN GFGPYRSDVP MPGLLLGGTL LPNSRDVTTE VPTRNDRTFW
GLSGTIGVDL GGGLRFQSIT GYRKSRRANI NDPETTSYAV FSPTLTAENA RQFSQELQLL
YTSDRLNGVA GLFYYDESLK AELDLGFPVI GAALGFPAAD YHEDGTIDIK AYAAFTQWTY
EVVDHLRLTA GVRYSDEKRR SNGTFTIFSF MPPPNAANVV VPVHVDKSWH ALTPKFSIDY
KPVENVMLYA SATRGFKSGV LLSGNPNPPV NPEYIWSYEA GIKSSFLDNR VQLNAAAFYY
DFKDLQVNRI INVSIVTENA AAARVKGAEV ELRARPVEGV TLNADATYLD ATFRKYSTKH
PARPELGLLD LSGNRLANAP KWSLNAGAEF DLPIGVPGRL SARGDVAWTG KVYFTEFNEN
LLSQDAVATV DASLQYESED GHWRASLFGK NLTNRKIVAN KFIAAQTTGF ALNGGFKPPR
TYGLRVGYRL
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