| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1557 |
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| Symbol | |
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| ID | 5198518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1731226 |
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| End bp | 1732542 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640581105 |
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| Product | homogentisate 1,2-dioxygenase |
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| Protein accession | YP_001262058 |
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| Protein GI | 148554476 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3508] Homogentisate 1,2-dioxygenase |
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| TIGRFAM ID | [TIGR01015] homogentisate 1,2-dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.474294 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCGCGTGG ATCACCCGAT CAGCCTTGCC GGAACGGCGA CGACAAAAGG CTATATGTCC
GGATTTGCCA ACGAGTTCGC GACCGAGGCA GTGCCCTGTG CCCTGCCCGC CGGACAGAAT
TCGCCGCAGC GCGCGCCCCT CGGCCTCTAT GCCGAGCAGC TTTCAGGAAC GGCGTTCACC
ATGCCCCGCG CCGAGATGCG CCGTACTTGG CTCTATCGGG TGCGCCCGTC GGCCGCGCAG
CCAGCCTTCC GCTCCCTGGA GCATATCGCC ATCGACGCTG GCTTCGAGCG CGCGTCCCCG
AACCGGCTGC GTTGGGATCC CCATCCCGCG CCGACCGTCG CGACTGACCT GATCGATGGC
CTGGCCCCGA TCGCGACGAC CTGCCTCGCC CCCCATGACG GCGTCACCGC CTACCGCTAC
GCAGCCAACC GCTCGATGGA GCGGGTCTTC TACAGCGCCG ACGGGGAGTG GCTCTTCGTG
CCCCATGAGG GCCGCCATCG CTTCGTCACC GAATGCGGCG TCCTGGAGCT TGGCCCCGGC
GAGATCTGCG TCATCCCCCG GGGCATGAAA TTTCGCCTCG AACTGCACGA CGATATGGCG
AAAGGCTATA TCTGCGAGAA CCATGGCGCG GAGCTGCGGC TGCCCGATCT CGGCCCGATC
GGTTCGAACG GCCTGGCCAA TCCGCGCGAC TTCCTGACGC CGGTGGCTGC CTTCGAGGAG
AAGGGGCCGA CGACATTGGT CGCCAAATTC GACGGCACGC TCTGGCAAAC CGAGCTCGGC
CACTCGCCGC TCGACGTCGT CGCCTGGCAC GGGAACAATG CGCCGTACAA ATATGACCTG
TTCCGCTTCA ACGCGATCGG AACGATCAGC TACGATCACC CGGACCCGTC GATCTACACG
GTCCTGACCT CGCCCAGCGC GGTGCGCGGG CTCGCCAATG TCGACTTCGT CATCTTTCCG
CCGCGCTGGC TCGTGGCCGA GAATACCTTC AGGCCGCCCT GGTACCATCG GAACCTGATG
AACGAGCTGA TGGGGCTCGT CACCGGCGTC TACGACGCGA AGGCGGACGG GTTCGTGCCC
GGCGGCGTAT CCCTCCATCC GCGCATGAGC GCCCATGGTC CCGATGCCCG GACCACCGAG
CGGGCCGAAG CCGCGCCGCT GGAGCCGCAC AGGATCGAGG GCACCATGGC CTTCATGTTC
GAGACCCACG CCCTCTTCCG CCCCAGCGCG TTTCCGGGGT TCAACGCGAC CGTCCAGCCG
GATTATGATT CCTGCTGGGA CGGTCTCGAG GGGCGCTTCC GGCGAGATGC GCGATGA
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| Protein sequence | MRVDHPISLA GTATTKGYMS GFANEFATEA VPCALPAGQN SPQRAPLGLY AEQLSGTAFT
MPRAEMRRTW LYRVRPSAAQ PAFRSLEHIA IDAGFERASP NRLRWDPHPA PTVATDLIDG
LAPIATTCLA PHDGVTAYRY AANRSMERVF YSADGEWLFV PHEGRHRFVT ECGVLELGPG
EICVIPRGMK FRLELHDDMA KGYICENHGA ELRLPDLGPI GSNGLANPRD FLTPVAAFEE
KGPTTLVAKF DGTLWQTELG HSPLDVVAWH GNNAPYKYDL FRFNAIGTIS YDHPDPSIYT
VLTSPSAVRG LANVDFVIFP PRWLVAENTF RPPWYHRNLM NELMGLVTGV YDAKADGFVP
GGVSLHPRMS AHGPDARTTE RAEAAPLEPH RIEGTMAFMF ETHALFRPSA FPGFNATVQP
DYDSCWDGLE GRFRRDAR
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