| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1503 |
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| Symbol | |
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| ID | 5197452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 1662817 |
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| End bp | 1666026 |
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| Gene Length | 3210 bp |
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| Protein Length | 1069 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640581050 |
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| Product | autotransporter beta-domain-containing protein |
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| Protein accession | YP_001262004 |
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| Protein GI | 148554422 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.662364 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTACC TGCTTGCCTC CACCTGCCTC GCCGCGATCG CCGCCGTGCC CGTCCATGCC
GAGACGACCG TCGGCGACAA GCGCACCGCG ACGATCCGCA CCTCGACGAT CAAGGCCGGC
GCCGCCGACG ACATCCGCAT CACCTCGGCC GGGTCGGTCG TGCCGACCGT CGCGGGCCCG
GCGGTGGTGC TCGACAGCGC CAACAAGATC GTCAACGAAG GCACGATCCA GGCCACCAAC
CTCGACAATT CGACCGGCAT CCGCGCCGAG GCGGGCGCCG CCGGATCGAT CACCAACGCC
TCCGGCGGCA AGATCATCCT CGACGAGACC TACACCGCCG AGGACAGCGA CAAGGACGGC
GACCTCGACG GTCCGTTCGC GGTCGGCACC GGCCGGGTCG GCATCCGCAC CGCCGGCGCC
TTCACCGGCG ACATCGTCAA CAGCGGCTCG ATCGCGATCG AGGGCAAGGA TTCGGCGGGC
ATCCGGCTCG ACGGCCCGCT GACCGGCAAG CTGACCCAGG ACGGCACGAT CGGCGTCGTC
GGCGACCGCT CGGTCGGCGT CCGCGCCGGC GACGTGACCG GCAACGTCCG CATCGCCGGC
ACGATCACCG CGGTCGGCCA GGACGCGGTC GGCGTCTCGC TGGACGGCAC CGTCACCGGC
GCGCTGGTGA TCCAGGGCGG GGTCACCTCG ACCGGCTATC GCAACACCAC CCCGCCGAGC
GACACGAGCA AGCTCGACGC CGACGACCTG CTGCAGGGCG GCCCCGCCGT CCGCATCGCC
GGCAACGTCA CCGGCGGCGT CATCTTCGCG GTGCCGCCGA AGGACAACAG CACCACCGAC
AATGACGAGG ACAAGGACGG CATCGAGGAC TCCAAGGAGG GCTCCGCGTC GATCACCTCC
TACGGCGCGG CGGCGGCGGT AGCGATCGGC GCCGTGGACC ATGCCGTCAC CCTGGGCGCC
GTCGCCGGCA ATGCCGACGG CCACGGCCTG GTCAACGAGG GCACGATCCA GGGCGCGGGC
ACCTATGCCG GCGTCGACGG CAGCGGCATG GTGATCGGCG GCCAGGGCGG CGCGGTGACG
ATCGCCGGCG GCATGACCAA CCGCGGCACG ATCAGCGCCT CGGGCGCCAA CGCCACCGGC
CTGCGGATCG GCGACGGCGC GACCGTGGCC GAGGTCAAGA ACATGGGCGT GCTCCAGGCG
TCGGGCACCA ACGCCGCCAA CGCGAAGACG GTGGCGCTGC AGATCGATCA GGGCGCGTTC
ACCTCCGAGA TCGTTAACAG CGGCACGATC AAGGCGGTCG CGAGCGGCAC CGCCTCGGCC
AACGGCGCGA CGGCGACCGC GATCCTCGAC CGCTCGGGCG AGGTCGACCT CGTCAGCAAC
AGCGGCACGA TCTCGGCGGC CGGCGCTTCG GCGGGCAGCA ACGTCGCGAT CGACCTGTCG
GCCAACGACC GTGGCGCGCG GATCGGCCAG ACGGTGGTCG CGAGCGGCAC CGCGCCGTCG
ATCGTCGGCG ACGTCCGCTT CGGCAACGGC AACGACCTGT TCGACATCGC CGACGGCAGC
GTGACCGGCG ACACCAGCTT CGGCGGCGGC GCGAACAGCC TGCTGCTGTC GGGCGACGCC
ACCTATGCGG GGAAGGTCCG CTTCGGCGGC GGCAACGACG TCATGACGCT GAGCGGCACC
GCCTCCCACA GCGGCGACGT CGACTTCGGC GGCGGCAGCG ACAAGCTGAC CGTGAACAGC
GGCGCCAGGT TCCGCGGCGC CCTCTCCAAC GCGCAGGGGC TGGCGGTCGC CGTCAACGGC
GGCACGCTCG ACATCGGCAA GTCGACCGCC GCGATCCAGT CGCTCGCGGT CAGCGGGTCG
GGCACGCTCG GCGTCGCGAT CGACGTGGCG AGCAAGAGCA GCACCCTCTA CCAGGTCGCG
GGCGAGGCGA GCTTCGCCCA GGGCTCCAAG GTCGCGGTCA GCCTCAACGG CATCGCCGGC
GCCGAGGGCC GCTACACCTT CCTGAAGGCC GGGACGGTGA CCGGCGCGTC CAACGTCGCG
ACCAGCGATG CCCTGCTGCC CTTCATGTAC AAGGGCAGCG TCGCCGCGGT CTCGCCGAAC
GAGCTGGCGA TCGACGTCAA GCGCAAGACC ACAAGCGAAC TGGGCCTCAA CCGCTCGCAG
GCCGCCGCCT ATGACGCGAT CTTCGCCGCG CTCGGCAAGG ATGCCAAGGT CGCCGGCGCC
TATCTGGAGA CCAATGACGG CGACGCCTTC CGCAAGAAGG TCCGCCAGAT GCTGCCCGAT
CATGCCGGCG GCGCGTTCGA GACGGTGACG ATGGGGTCGC GCGCGACCGC GGGCTTCCTG
GCCGATCCGA ACGCCCCCTT CGCCGACATG GGCAAATGGG GCTACTGGAT CCAGCAGGTC
GGCTGGGGCA CGTCGAAGGG GCTGGGCGAC ACCGCCTCCT ACGACATCAC CGGCTGGGGC
GTCGCGACCG GCGGCGAGAT CAAGACCAAC CTCGGCAGCT TCGGCATCTC GCTCGCCTAT
CTCTACGGCA AGGACGCCGA CGGCGGCACC GACAACAAGG TCGACGCCGG CCAGTACGAG
ATCGGCGCCT ATTGGCGCGG CTATTGGGGG CCCTTCCAGG GCTGGACCCG CGCCAGCTAC
GCCCATGTCG ACTTCAAGGG CGAACGCGTC TTCCAGGGCA GCCTGGGCAC CGACACGGTC
GAGCGGCGCG CCAAGGGCCG GTGGAACGGC AAGCTGATCT CGGCGGCGGC CGGCGCGGCC
TACACGCTGC AGATGGGATC GTTCAGCGTC CGGCCGAAGG CGGCGCTCGA CTATTACCGG
CTGAAGGAGG ACGGCTATGC CGAGAAGGGC GGCGGCGACG CGTTCAACCT GATCGTCGGC
GGCCGCAAGA GCGACGAACT GGCGGTCAGC GGCACGGTCG CCGCCGGCTT CGACTTCGGC
GGCCAGAACG AGGAAGCGGG CTGGTTCCGG ATCGAGGCCG AGGGCGGCCG GCGCGAGCTG
GTCGGCGGAT CGCTGGGTTC GACCACCGCG CGCTTCGCCG GCGGCACCGC CTTCACCCTG
GAGCCCGAGA AGCGCACCAG CGGCTGGATC GGCAAGCTGC GCGCCGTCGG CGGCGGCAAC
GGCTTCCAGA TCGGCGGCGA GGCCGGCGCC GAGCAGCAGC AGGGCCGCGC CGCCATCTCG
CTGCGCGCCA GCCTGGTGGT CGGCCTCTGA
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| Protein sequence | MRYLLASTCL AAIAAVPVHA ETTVGDKRTA TIRTSTIKAG AADDIRITSA GSVVPTVAGP
AVVLDSANKI VNEGTIQATN LDNSTGIRAE AGAAGSITNA SGGKIILDET YTAEDSDKDG
DLDGPFAVGT GRVGIRTAGA FTGDIVNSGS IAIEGKDSAG IRLDGPLTGK LTQDGTIGVV
GDRSVGVRAG DVTGNVRIAG TITAVGQDAV GVSLDGTVTG ALVIQGGVTS TGYRNTTPPS
DTSKLDADDL LQGGPAVRIA GNVTGGVIFA VPPKDNSTTD NDEDKDGIED SKEGSASITS
YGAAAAVAIG AVDHAVTLGA VAGNADGHGL VNEGTIQGAG TYAGVDGSGM VIGGQGGAVT
IAGGMTNRGT ISASGANATG LRIGDGATVA EVKNMGVLQA SGTNAANAKT VALQIDQGAF
TSEIVNSGTI KAVASGTASA NGATATAILD RSGEVDLVSN SGTISAAGAS AGSNVAIDLS
ANDRGARIGQ TVVASGTAPS IVGDVRFGNG NDLFDIADGS VTGDTSFGGG ANSLLLSGDA
TYAGKVRFGG GNDVMTLSGT ASHSGDVDFG GGSDKLTVNS GARFRGALSN AQGLAVAVNG
GTLDIGKSTA AIQSLAVSGS GTLGVAIDVA SKSSTLYQVA GEASFAQGSK VAVSLNGIAG
AEGRYTFLKA GTVTGASNVA TSDALLPFMY KGSVAAVSPN ELAIDVKRKT TSELGLNRSQ
AAAYDAIFAA LGKDAKVAGA YLETNDGDAF RKKVRQMLPD HAGGAFETVT MGSRATAGFL
ADPNAPFADM GKWGYWIQQV GWGTSKGLGD TASYDITGWG VATGGEIKTN LGSFGISLAY
LYGKDADGGT DNKVDAGQYE IGAYWRGYWG PFQGWTRASY AHVDFKGERV FQGSLGTDTV
ERRAKGRWNG KLISAAAGAA YTLQMGSFSV RPKAALDYYR LKEDGYAEKG GGDAFNLIVG
GRKSDELAVS GTVAAGFDFG GQNEEAGWFR IEAEGGRREL VGGSLGSTTA RFAGGTAFTL
EPEKRTSGWI GKLRAVGGGN GFQIGGEAGA EQQQGRAAIS LRASLVVGL
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