| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0804 |
|---|
| Symbol | |
|---|
| ID | 5197422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 895089 |
|---|
| End bp | 895778 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640580348 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001261309 |
|---|
| Protein GI | 148553727 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGATT CTGATCTGGA CGGGAGCAGG CCGCCGCACC GCGTGCTGCT GATCGAGGAC
GACCCTCCGA TCCGCGAGCG CCTGGCGAGG GCGCTGGCCG CGCATGGCGA TTGTCGGGTC
GCGTCCGCTG GAACCCTCGC CGAGGCGCGC GCGCGGCTGG CCGAAGGGGA ACAGGACCTG
ATCGTTTCGG ATCTCAGGCT TCCCGACGGC CTCGCGATCG ACCTTCTCGC CGAGGCGCGG
GAACGCCATC CCGGGATCGA GATACTGGTG ATCTCGGTGC TCGGCGACGA GACGACGATC
CTGGCCGCGA TCGCCGCCGG GGCCTCGGGC TATCTGCTCA AGGACGCCCT GCCGGAGGAC
ATCCATGCCA CGGCGATGGA GGTGTTGTCC GGCGGTTCGC CGATTTCGCC GTCGATCGCG
CGCTTCATCG TGCGGCGCGC GCGGCAGGAG AGCAGCGGCG CGCCGGCCGC CGCCGGACCC
GGCGAGGATG CCCCGCGGCT CACCCCGCGG GAACTCGACA TCCTGTGGGG GATCGCCAAG
GGGCTGACCT ATAACGAGAT CGCCGACCAG CTCGACCTGT CCCGCCACAC CGTTCCCGGC
CATATCAAGG CGATCTACCG GAAATTGCAG GTCCAGACGC GCGGCGAGGC CGTGTACGAG
GCCATCCAAT GCGGCCTCAT CAGGCTCTGA
|
|---|
| Protein sequence | MQDSDLDGSR PPHRVLLIED DPPIRERLAR ALAAHGDCRV ASAGTLAEAR ARLAEGEQDL
IVSDLRLPDG LAIDLLAEAR ERHPGIEILV ISVLGDETTI LAAIAAGASG YLLKDALPED
IHATAMEVLS GGSPISPSIA RFIVRRARQE SSGAPAAAGP GEDAPRLTPR ELDILWGIAK
GLTYNEIADQ LDLSRHTVPG HIKAIYRKLQ VQTRGEAVYE AIQCGLIRL
|
|---|
| |