| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0518 |
|---|
| Symbol | |
|---|
| ID | 5200740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 560311 |
|---|
| End bp | 562359 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640580059 |
|---|
| Product | lytic transglycosylase, catalytic |
|---|
| Protein accession | YP_001261024 |
|---|
| Protein GI | 148553442 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.936483 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCG TCCGAGAAAC GAATGCGCCC AATAGGTTCG GCTACCCTAA CCTGTCCAGC
CGCTCCCGCC GTCTTTTTAC GGGTCTGACC CTTCTCGCCT CGACCGCGGC GATCGCCGCG
ACCGTCGCGC CCGAACCGGC GCCCGCGCCG GCGGTCCAGT CGCCCGCGCC CGGCGCGCCG
GCGTGGCGGA GCGACGTGCT GCAGGGCGTG ATCGGCGAAT GGCGGCGGTT GCAACAGAGC
GATTCGCTGC CGTTCCAGGA CTATGCGGCC TTCCTGATCG CCCATCCGGG CTGGCCGGGC
GAGAGCGCGA TGCGCCGCGC GGCGGAGCGG CGCATCGATC CGAACAGCTA TGATCGCGGG
CTGGTCGTCA CCTTCTTCAC CCGCTTCCCG CCGCTGACCG CCGCCGGCCA GACCCGCAAT
GCCGAGGCGC TCGCCGCCAC CGGCCGCATG GCCGAGGCGC GCAGCAATGC CGCCGCCGCC
TGGGTGACCA AGGGCCTGAG CCAGGACGAC GAGGCGCGGC TGCTCGCCCG GTTCGGCGCC
GGCATGACCC CGGCCGATCA CGACCGGCGG ATGGAGCGGC TGCTGCTCGA CCGGGCGACG
ACGGCCGCCG GGCGACAGGT CGCCAACGTC TCGCCGGCCC GGCGGGCGCT CTACGCGGCG
CGGCTCGCCC TGCTGCGCAA CGACGCCGAC GTCGACGCGC GGATCGCGGC GGCGGGCGAC
GCGGTCAACC ATGATCCGGG CTATATGATC GAACGCGCCC GCTATCTGCG TGATCGCGGC
GACAGCATGG GCGCCCGCAT CTGGCTCGGC CAGTCGCGCG ACCTGAGCGG GCCGCCGTTC
GACAGCGCCG CCTTCCTCGA CGACCTGCTG AGCTTCGCCC GCGCGGCCAA TGCCGACGGC
CAATATGATC TGGCGCTGGC GATCGCGAAA CATGCCGAAC AGGCCTTCCC GCCCGGAACC
CGCATCCGCG ACCGGCCGTT CGCCGAGCGC GACGACTATA CCAGCCTGAT GTGGCTGGCG
GGCACCGCCG CGCTCCAGAA GCTCGGCCGC TACGACGACG CGGTGACGAT GTTCGACCGC
TATTCGCGAG CAGCGCAGAC GCCGGGGACG CAAACCAAGG GCTGGTACTG GGCGGGCCGC
GCGGCGGAAC GCGGCGGCAA GCCCGACTGG GCGAAGAGCT ACCTCAACCA GGCCGCCGTC
CATATCGACC AGTTCTACGG CCAGCTCGCC GCCGAACGGC TCGGCCGCGA GCTGATGATC
CCGCCCGAGC CGCCGCGCAC CATGGTCCCG CCCACCGAAC GCGCCTCGTT CGAGGCGAGC
GAGGTGGTCC GCGCCGCCCG CCTGCTCGGC CAGTCCGGCC AGTGGCAGGA CCAGACCGCC
TTCATCCGCC TGATCGCCGC CAATGCGAAG ACCGACAGCG ACCATATCCT CGCCGGCGAG
CTCGCCAGGT CGATGAACCG CCCCGACCTT GGCGTGATGG TCTCGCGCGC CGCGCGGACC
AGCGGCACCC CCGATCCGTT GCGAATCGGC TTTCCCGAGG TGCCGGTGCC CCAGGCGATG
AACGGCCATT GGACGCTGAT CCACGCGATC AGCCGCCAGG AGAGCCAGTT CGACCGCCAG
GCGACGAGCC GCACCGGCGC GCGCGGGCTG ATGCAGCTCA TGCCGGCGAC CGCGCGCGAG
CAGGCCGGCA AGCTCGGCCT CGCCTATGAT CCGGCCCGGC TCGCCGACAT CGACTATAAC
GTCATGCTCG GATCGGCCTT CTTCGACCGG ATGCTGACCT ATTATGGCGG CAGCTACGTC
CTCGCCGTCG CCAGCTACAA TGCCGGTCCC GGCAATGTGA ACAAGTTCAT CAAGGCCAAT
GGCGATCCGC GCATGCCGGG CGTCGACGTC GTCGACTGGA TCGAGGCGAT CCCCTTCGCC
GAGACGCGCG GCTATGTGCA GAAGGTGCTG GAGAACGCGG TCGTCTACGA CCTGCTCAAC
CCCTCCCGCG CCCGGAGCGC GACGAAGAAC CGGCTTTCCT CCTATCTCGG CAAGGCGAAG
CCGGGGTGA
|
|---|
| Protein sequence | MKLVRETNAP NRFGYPNLSS RSRRLFTGLT LLASTAAIAA TVAPEPAPAP AVQSPAPGAP
AWRSDVLQGV IGEWRRLQQS DSLPFQDYAA FLIAHPGWPG ESAMRRAAER RIDPNSYDRG
LVVTFFTRFP PLTAAGQTRN AEALAATGRM AEARSNAAAA WVTKGLSQDD EARLLARFGA
GMTPADHDRR MERLLLDRAT TAAGRQVANV SPARRALYAA RLALLRNDAD VDARIAAAGD
AVNHDPGYMI ERARYLRDRG DSMGARIWLG QSRDLSGPPF DSAAFLDDLL SFARAANADG
QYDLALAIAK HAEQAFPPGT RIRDRPFAER DDYTSLMWLA GTAALQKLGR YDDAVTMFDR
YSRAAQTPGT QTKGWYWAGR AAERGGKPDW AKSYLNQAAV HIDQFYGQLA AERLGRELMI
PPEPPRTMVP PTERASFEAS EVVRAARLLG QSGQWQDQTA FIRLIAANAK TDSDHILAGE
LARSMNRPDL GVMVSRAART SGTPDPLRIG FPEVPVPQAM NGHWTLIHAI SRQESQFDRQ
ATSRTGARGL MQLMPATARE QAGKLGLAYD PARLADIDYN VMLGSAFFDR MLTYYGGSYV
LAVASYNAGP GNVNKFIKAN GDPRMPGVDV VDWIEAIPFA ETRGYVQKVL ENAVVYDLLN
PSRARSATKN RLSSYLGKAK PG
|
|---|
| |