Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0452 |
Symbol | |
ID | 5196831 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 481546 |
End bp | 482673 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640579991 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001260958 |
Protein GI | 148553376 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGACC GCGATCCCGC CACCGAAGCC ACCTCCAGCA CCACCGACGT CGCCGACACG CTCCAGTCGC CGCCGAGCGG ATGGGCGCCG CCGCCGCGCA GCCGCAGCGT GACGATCGCG ATCGTCGCGA TCGCCGTCGT CGCGATCCTC GCCATCCTCT ATGCGTGGCA GCTGCCGCCC TTCGCCGGCT TCTCCGAACG GACCGACAAT GCCTATGTGC GCGGCCGGGT GACGATCATC AGCCCGCAGG TCAGCGGCTA TGTGACCAGC GTGCCCGTCC AGGACTTCGC CGAGGTGAAG GCGGGACAGG TCCTCGCGAC GATCGACGAC CGCATCTATC GCGCGCGGGT GGCGCAGGCG GAGGCCAATG TCGCGGCGCA GGAGGCCTCG CTCGCCAATT CGACCCAGGC GCAGCGATCG CGCGAGGTGG CGACCGCCAG CCAGGACGCC GCGATCGTCA ATGCCCGCGC CCAGCTCGTC CGGGCCGAGG CCGACATGCG CCGCGCCGAC GCGCTGATCG CCGACGGATC GATCTCGGCG CGCGAGCGCG ACCAGACCCG CGCGGCCCTG CTCGCCGCGC AGGCCGGCGT CCGCCAGGCC GAGGCCGCCC GTGCGATCGG CACCCAGGAC GTCCGCACCG TGCTGGTCGG GCGCGGCGGA CTGACCGCGG CGGTCGAGGG CGCCCGCGCC CAGCTCCGCC TCGCCCGGAT CGACCTCGAC AACACGGTGA TCCGCGCGCC GGTCGCCGGG CAGCTCTCCG AGATCGGCGT GCGCAACGGC GCGTTCGTCA CGGCCGGCAC CCAGCTGATG TTCCTGGTGC CGCACGACGC CTGGGTGGTC GCCAATTTCA AGGAGGCGCA GACCCGGGAC ATGCGGGTCG GCCAGAGCGC GAGCTTCAAG GTCGACGCGC TGGGCGGGGC CAAGCTGACC GGCCATGTCG AGAATATCGC GCCCGCCGCC GGCTCCGAGT TCGCCGTGCT GAAGGCCGAC AACGCCACCG GCAATTTCGT CAAGGTGGCG CAGCGCATCT CGGTCCGCAT CCGCATCGAC CCCGGACAGG AGCTCGCCCG CCGCCTGCGC CCGGGCATGT CGGTCGAGGC GAAGATCCAC ACGAGCGGGT CGCTCTGA
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Protein sequence | MSDRDPATEA TSSTTDVADT LQSPPSGWAP PPRSRSVTIA IVAIAVVAIL AILYAWQLPP FAGFSERTDN AYVRGRVTII SPQVSGYVTS VPVQDFAEVK AGQVLATIDD RIYRARVAQA EANVAAQEAS LANSTQAQRS REVATASQDA AIVNARAQLV RAEADMRRAD ALIADGSISA RERDQTRAAL LAAQAGVRQA EAARAIGTQD VRTVLVGRGG LTAAVEGARA QLRLARIDLD NTVIRAPVAG QLSEIGVRNG AFVTAGTQLM FLVPHDAWVV ANFKEAQTRD MRVGQSASFK VDALGGAKLT GHVENIAPAA GSEFAVLKAD NATGNFVKVA QRISVRIRID PGQELARRLR PGMSVEAKIH TSGSL
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