Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_0431 |
Symbol | |
ID | 5198953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | - |
Start bp | 456336 |
End bp | 458360 |
Gene Length | 2025 bp |
Protein Length | 674 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640579970 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001260937 |
Protein GI | 148553355 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.213243 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAAGA CGAACGGGAG CGAGGGTGGC GATCGAATCG ACGGCGACGC CCCGCTCATC GATCTCAACG AAGGATCGCT CAAGAAGCTG ATCGCCCGCG CGAAGCGCAA GGGCTACATC ACCTACGAGC AGCTCAACGA GGCGCTGCCG CAGGACCAGA TGACCTCCGA CCAGCTCGAA GACGTGATGT CCGCGCTCAA CGAGATGGGC GTGAACATCG TCGAGAACGA GGATGCCGGC GAGGACGAGC AGCCCGAGGA GGACGGCATC GACGAGGTCG CCGGCTCCGA GGAAGGCGAT ACCGGCCCTG CCCTCACCAC CACGGCGAAG AAGGAAACGG TCGACCGCAC CGACGATCCG GTGCGCATGT ACCTGCGCGA GATGGGCGCC GTCGAGCTGC TCAGCCGCGA GGGCGAGATC GCGATCGCCA AGCGCATCGA GGCCGGCCGC GACACGATGA TCCTGGGCCT CTGCGAGAGC CCGATCACCT TCAACGCGAT CATCGAATGG TCGAACGCGC TCAACGAGGG CACGATGCAG CTGCGCGAGA TCCTCGATCT CGACGCGATG CTGTCGAAGG GGCCGACCGC CGAGCAGGTC GAGAACGAGG ACGCCGACGC CGAGATATCG GCCGAGACGG CCGGCCCGAC CTTCAAGGAG GAGGAAGAGC CCGAGGAGGA GGCCTCCGCC GACGAGGACG AGGATTCGAT GACCGAGCGG CGCGCTCCGC GCCCGCAGGA AGACGACGAC GAGGACAACA CCCTCAGCCT CGCCCAGATG GAAGAGCAGC TCAAGCCGAT GGCGCTCGAG CGGTTCGCGG CGATCACCGA TCTCTACAAG ACCTTCTCGC AGGTCCAGTC CGCGCGCGTC GCCGCGCTCG GCGTCGGCGA CGACTTCCCG GCCGCCGAGG AGGAGCGCTA CCAGGGCCTG CGCGAGCAGC TCACCGCCGA GGTCGAGAGC GTCCAGTTCC ACGGCGCGAA GATCGAATAT CTCGTCGACC AGCTCTATTC GTTCAACCGC CGGCTGACCA CGCTGGGCGG GCAGATGCTG CGCCTGGCCG AGCGCCACAA GGTGCCGCGC CGCGACTTCC TCGAAGCCTA TGTCAACCAC GAGATGGAGG ACGGCTGGCT CGACCGGGTC GGCCGGATCG ACAAGAAGTG GGCGAATTTC GCGGCCAACG AGGCCGACGC GGTCGATCGC ATCCGCAACG AGATCGGCGA GATCGCCCAG GCGACCGGCA TGGCGCTCAG CGAGTTCCGC CGCATCGTCA ACATGGTGCA GAAGGGCGAG CGCGAGGCGC GCATCGCGAA GAAGGAGATG GTCGAGGCCA ATCTCCGCCT CGTCATCTCG ATCGCCAAGA AATACACCAA TCGCGGCCTG CAGTTCCTGG ACCTGATCCA GGAGGGCAAT ATCGGGCTGA TGAAGGCCGT CGACAAATTC GAATATCGCC GCGGCTACAA GTTCAGCACC TATGCGACCT GGTGGATCCG GCAGGCGATC ACCCGCTCGA TCGCCGACCA GGCGCGGACG ATCCGCATCC CGGTCCACAT GATCGAGACG ATCAACAAGC TGGTCCGCAC GAGCCGCCAG ATCCTGCACG AGATCGGCCG CGAGCCGACC CCGGAGGAAC TGGCCGAGCG GCTGTCGATG CCGCTCGAGA AGGTCCGCAA GGTGATGAAG ATCGCCAAGG AGCCGATCAG CCTCGAGACG CCGATCGGCG ACGAGGAGGA CAGCCATCTC GGCGACTTCA TCGAGGACAA GAACGCGATC ATCCCGGTCG ATGCCGCGAT CCAGTCCAAC CTGAAGGAAA CCGTCACCCG CGTCCTCGCC AGCCTCACCC CGCGCGAGGA GCGCGTGCTG CGCATGCGCT TCGGCATCGG CATGAACACC GATCACACGC TGGAGGAGGT CGGCCAGCAA TTCTCGGTGA CGCGCGAGCG CATCCGCCAG ATCGAGGCGA AGGCGCTTCG CAAGCTCAAG CATCCGAGCC GCAGCCGCAA GATGCGGAGC TTCCTCGACC AGTAA
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Protein sequence | MAKTNGSEGG DRIDGDAPLI DLNEGSLKKL IARAKRKGYI TYEQLNEALP QDQMTSDQLE DVMSALNEMG VNIVENEDAG EDEQPEEDGI DEVAGSEEGD TGPALTTTAK KETVDRTDDP VRMYLREMGA VELLSREGEI AIAKRIEAGR DTMILGLCES PITFNAIIEW SNALNEGTMQ LREILDLDAM LSKGPTAEQV ENEDADAEIS AETAGPTFKE EEEPEEEASA DEDEDSMTER RAPRPQEDDD EDNTLSLAQM EEQLKPMALE RFAAITDLYK TFSQVQSARV AALGVGDDFP AAEEERYQGL REQLTAEVES VQFHGAKIEY LVDQLYSFNR RLTTLGGQML RLAERHKVPR RDFLEAYVNH EMEDGWLDRV GRIDKKWANF AANEADAVDR IRNEIGEIAQ ATGMALSEFR RIVNMVQKGE REARIAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKLVRTSRQ ILHEIGREPT PEELAERLSM PLEKVRKVMK IAKEPISLET PIGDEEDSHL GDFIEDKNAI IPVDAAIQSN LKETVTRVLA SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ IEAKALRKLK HPSRSRKMRS FLDQ
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