| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0223 |
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| Symbol | |
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| ID | 5200840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 221291 |
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| End bp | 225325 |
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| Gene Length | 4035 bp |
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| Protein Length | 1344 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640579763 |
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| Product | LVIVD repeat-containing protein |
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| Protein accession | YP_001260732 |
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| Protein GI | 148553150 |
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| COG category | [S] Function unknown |
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| COG ID | [COG5276] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGTGGG CGGCGCGCGG CGCGATGGCG CTGGCGGCGG CGGTCGCCTT CCTCGTCTCG
GCGCCCTCGC CCGCCCCGGC CTCCGAGGGC GAGAAGCCGG TCGCGCGCAG CTATCCCAAA
TTCGCCGACG CCCCGCGCAC CCAGGACTGG GCCGAGGCCG ACGGCAAGAG CGCGGGCTGC
GTCTCCTGCC ACACCGCGAC CGACCGCAAG ACGATGCACC AGACCGAGGC GGTCGTGCTC
GGCTGCGTCG ACTGCCATGG CGGCGACGCG ACCGTCCATG TCGATGCCGG CGCGAAGATG
GGCGACGCCG CCTATACCCG CGCCCGCGAC AAGGCGCACG TCCTGCCGAA ATATCCGGAG
AGCTGGCACT GGCCCTCCCC CGCCAACCCG AAGCGCGGCT ACACGCTGCT CAACCGCGAG
GCGCCCGAAT ATGTGCGCTT CGTCAACCCG GGCGACTATC GCGTCGCGCG CCAGGCCTGC
GGCTCCTGCC ACCTGGAGAT CATCCAGGCG GCCGAGCGCT CGCTGATGTC GACCGGCACG
ATGTTCTTCG GCGGCGGCGC CTACAACAAC GGCATCGTCC CCTATAAGAA CTACATCTTC
GGCGAGGCCT ATACGAGCAA GGGCGAGCCG GCGCAGGTCA AGTCGCCGGG CACGCCCGCG
GGCACCGTGA CGCCCGAGCA GAAGGCGCGC GGCGCGCTGC CGGTCGTCTA TCCGCTGCCG
ACCTGGCACG TGCTCCCGCC CGCCGACGTC TTCCGCGTGT TCGAACGCGG CGGCCGCACG
ATCAACAGCA CCTTCGCCGA GATCGGCCTG CCCAACTCGA CCGGCAGCAT CCAGCGCCTC
GAGGAGCCGG GTCGTCCCGA CCTCAAGCAG TCGAACCGCG GCCCCGGCAC CGGCCTGCGC
GTCGCGATCG CCGTGCTCAA CCTCCACAAG ACGCGCCTCA ACGACCCGTT CATGTGGTTC
ATGGGCACCA ACGACCAGCC CGGCGACTAT CGCAGCTCGG GCTGCTCGGG CTGCCACGTC
GTCTATGCCA ACGATCGCGA TCCGACCCAC AGCCTGATCT ACGCCAAATA TGGCCGCGAC
GGGCAGACCG CGACGGTCGA CCCGACGATC AAGGACCGGC TCGAACCCAA GGACGACGGC
CATGGCGGCC ACGGCGCCAA GGGGAGCGGT CCCAAAGGCG ATCACGGCGA CGACCACGGC
ACCGCCGACA CGCCGCGCCA TCCGATCGGC GCGATGAAGG AGAAGGGCCA CCCGATCGAG
CACGCCTTCA CCAAGGCGAT CCCGACCGCG CAGTGCATGA ACTGCCACAT GCACCAGCCC
AACATCTTCC TCAATTCCTA CCTCGGCTAC ACGATGTGGG ACTATGAGGC CGACGCGCCG
CTGATGTGGC CGGAGAAGCA GAAGCATCCG ACCATGGCCG AGCGCCACGC GGTCTACGAG
CGCAACCCCG AAGGCGCCGC CGCGATCGGC AAATGGGGCG ATCTCGACTT CACGCGCAAC
GTCTATGACG ACATCAATCC GCGCGCCAAG GACACCCAGT TCGCCGACTA TCACGGCCAT
GGCTGGAACT TCCGCGCGGT CTACAAGCGC GACCGCGAGG GCAACCTGCT CGACGAGGCC
GGCAACATCG TCTCGCCCGA CGATCCCGAG AAGTTCCGCA AGGCGGGCAT GCCCGAATTC
GCCCCCGTCG GCGAACAGAA GGGCAAGGCG GTCCACATGA TGGACATCCA CGCCGAGAAG
GGCCTGCAAT GCGCCGACTG CCACTTCGCG CAGGACAGCC ACGGCAGCGG CCTGATCTAT
GGCGAGGTCG CCGCCGCGGT CGAGATCGGC TGCAAGGACT GCCACGGCAC CGCCGACGAT
TTCCCGACCC TGCGCACCTC GGGCCCCGCC GCGCCTCCGG GCGGCACCGA CCTGTCGCTG
CTGCGCAACC AGGACGGCAA GCGCCGCTTC GAGTGGACCA CCGACGCCAA TGGCGAGCGC
GCGCTGATCC AGCGCTCGAT CGTCGATCCC AAGCTCGAAT GGAAGGTCTC GCTCGTCAAG
GAGGCGGTCG ACCGCAACAG CGCCCATTTC AACCCGCTGG CGGCGCGCTC CAAGCTGATG
GGCAAGGCCG GCAAGGACAC CGGCCAATAT CTCTGGGGCC CGGGCATCGC CAAGGCCGAC
CGCGCCCACG ACACCGACAA GATGGCCTGC TTCACCTGCC ATTTGTCGTG GACGACCTCG
TGCGGCGGCT GCCACCTGCC GATCGAGGCG AACTGGAAGA CCAGCTCCCA CAAATATGAG
GGCTGGGAGA CGCGCAACTT CGCCAGCTAC AACCCGCAGG TCGCGCGCGA CGAGATGTAC
CAGCTCGGCA TCCACCAGAC GACCAAGGGC AACATCATCG CCCCGATCCG GTCGACATCC
GCGCTGGTGC TGTCGTCGAC CAACCTGAAC CGCGAGCGCA TCTATGTGCA GCAGCCGCCG
ATCTCGTCGG CCGGCTTCTC CAGCCAGGCC TTCGCGCCGC ACTTCCCGCA CACCGTCCGC
AAGACCGAGA CGAAGAAGTG CACCGACTGC CACCTGTCGG AGGAAGACGA CAACAACGCC
ATCATGGCCC AGCTCAACCT GCTCGGCACC AACTTCGTCA ACTTCGTCGG CCTCAACGCC
TGGACCGGGC TGGAGAAGGG GATCGAGGCG ATCCGCGTGA CCGAATGGGA CGAGCCGCAG
GCGGTGATCG GCTCCTACCT GCACAAATAT GCCTATCCGG AATGGTACAA GCAGCATCTC
GACCATGGCC GCGAGCTGAT CGAATGGGTG CGCGGCACCC GCTTCGACAA GAAGCTGTCG
GGCGAGCCGG ACTCGCTCGA GGAGTTCGCC AACACCCATC ACCCGACCGG CGGCGCGGCG
CGCTGCGTCC AGCTCCGCGG CGAATATTTC TTCGTCGCCG AGGGCAAGGG CGGGTTCCGC
GTCTATGACG TCGCGTCGAT CGCCAACAAG GGCACCTCGC AGCGCATCCT GACCGCGCCC
TTCTCCCCGC TCGGCCACGA CACCCATGTC CCGTCGCAGA ACGCGACCTG CATGGCGCTG
CCGACCGACC AGGCGATCTC GACCGAGCGC AACGACCACA TCCTCAAATA TTATCCCGAG
AACCAGGAAC AGAAGATGGG CGAGATCTAT CGCTACGCCT TCGTCACGGA CTCGGTGGAG
GGCCTGATCG TCGTCAATGT CGAGACGCTG GCCGACGGCG AGCCGCGCAA CAACTTCCTG
AAGCGCACCG CCACCTGGAA CGAGAACAAC GTCCTCGCCG GCGCGCGCCA CATCACGATC
GGCGGCAACT ACGCCTATAT CGCCGCCGCT GTCGGGCTGG TCGTCGTCGA CATCAGCGAT
CCGAAGCATC CGCGCCTCGC CGCGACGGTG CCGCTGCGCG ACGCCCGCGC CTCGGCGCTG
CAGTTCCGCT ATCTGTGGGT GACGACCGCC GACGGCCTCC AGCTCGTCGA CGTGACCCAG
CTCGACAAGC CGGTGCTGAT CCCGTCGGCG ACGCTGCCGA TCGCCAATGC GCAGCGCATC
TACCTGGCCC GCACCTATGC CTATGTCGCG GCGAAGCAGG ACGGGCTGGT GATCGTCGAC
ATCACCCGGC CGCTCAAGCC GAAGCTCTAC GAGAAGGTGA CGTTCGACGG GCGGCTCAAC
GATGCCGAGG ACGTGATCGT CGGCACCACC AACGCCTCGC TGTTCGCCTA TGTCGCCGAC
GGCCGCAACG GCCTGAAGGT GATCCAGCTC ACCTCGCCGG ACAGCCAGCC CAATTTCTAC
GGCTTCTCGC CCGCGCCCAA GCCCGAGCTG ATCGCCTGGG CGAAGACCCC CTCGCCCGCG
CTGGCGCTGT CGAAGGGCCT GGACCGCGAC CGCGGCGTCG ACGAGAGCGG CAACCAGATC
GCGATCTTCG GCCGCCTCGG CTCGCGCCCG TTCAAGCGCA ACGAGATGGA GAAGCTCTAT
CTCAACGCCA AGGGCCAGGT CTGGAAGGTC AGCGACACCC CGACCTTCGC CGACTGGGTC
CCGGCGCGGA AATAG
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| Protein sequence | MRWAARGAMA LAAAVAFLVS APSPAPASEG EKPVARSYPK FADAPRTQDW AEADGKSAGC
VSCHTATDRK TMHQTEAVVL GCVDCHGGDA TVHVDAGAKM GDAAYTRARD KAHVLPKYPE
SWHWPSPANP KRGYTLLNRE APEYVRFVNP GDYRVARQAC GSCHLEIIQA AERSLMSTGT
MFFGGGAYNN GIVPYKNYIF GEAYTSKGEP AQVKSPGTPA GTVTPEQKAR GALPVVYPLP
TWHVLPPADV FRVFERGGRT INSTFAEIGL PNSTGSIQRL EEPGRPDLKQ SNRGPGTGLR
VAIAVLNLHK TRLNDPFMWF MGTNDQPGDY RSSGCSGCHV VYANDRDPTH SLIYAKYGRD
GQTATVDPTI KDRLEPKDDG HGGHGAKGSG PKGDHGDDHG TADTPRHPIG AMKEKGHPIE
HAFTKAIPTA QCMNCHMHQP NIFLNSYLGY TMWDYEADAP LMWPEKQKHP TMAERHAVYE
RNPEGAAAIG KWGDLDFTRN VYDDINPRAK DTQFADYHGH GWNFRAVYKR DREGNLLDEA
GNIVSPDDPE KFRKAGMPEF APVGEQKGKA VHMMDIHAEK GLQCADCHFA QDSHGSGLIY
GEVAAAVEIG CKDCHGTADD FPTLRTSGPA APPGGTDLSL LRNQDGKRRF EWTTDANGER
ALIQRSIVDP KLEWKVSLVK EAVDRNSAHF NPLAARSKLM GKAGKDTGQY LWGPGIAKAD
RAHDTDKMAC FTCHLSWTTS CGGCHLPIEA NWKTSSHKYE GWETRNFASY NPQVARDEMY
QLGIHQTTKG NIIAPIRSTS ALVLSSTNLN RERIYVQQPP ISSAGFSSQA FAPHFPHTVR
KTETKKCTDC HLSEEDDNNA IMAQLNLLGT NFVNFVGLNA WTGLEKGIEA IRVTEWDEPQ
AVIGSYLHKY AYPEWYKQHL DHGRELIEWV RGTRFDKKLS GEPDSLEEFA NTHHPTGGAA
RCVQLRGEYF FVAEGKGGFR VYDVASIANK GTSQRILTAP FSPLGHDTHV PSQNATCMAL
PTDQAISTER NDHILKYYPE NQEQKMGEIY RYAFVTDSVE GLIVVNVETL ADGEPRNNFL
KRTATWNENN VLAGARHITI GGNYAYIAAA VGLVVVDISD PKHPRLAATV PLRDARASAL
QFRYLWVTTA DGLQLVDVTQ LDKPVLIPSA TLPIANAQRI YLARTYAYVA AKQDGLVIVD
ITRPLKPKLY EKVTFDGRLN DAEDVIVGTT NASLFAYVAD GRNGLKVIQL TSPDSQPNFY
GFSPAPKPEL IAWAKTPSPA LALSKGLDRD RGVDESGNQI AIFGRLGSRP FKRNEMEKLY
LNAKGQVWKV SDTPTFADWV PARK
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