| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0182 |
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| Symbol | |
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| ID | 5200708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 172960 |
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| End bp | 173403 |
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| Gene Length | 444 bp |
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| Protein Length | 147 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640579721 |
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| Product | Type IV secretory pathway protease TraF-like protein |
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| Protein accession | YP_001260691 |
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| Protein GI | 148553109 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATCGTC CGCCTCTGCG CCTGGTCTGG AACGTATCGC CGAGCGTGCC CGTCGGGCTC
TATCGCATCG ACTCCGCCGG CGATCCCCGC CCCGGCGACC TGGTCGCGTT GCGCCCATCG
CCCGACCTCA CCCGGTTGAT GGCGGAGCGG CACTATGTCG AGGCCGGCGC ACTCCTCCTC
AAGCCGATCG CCGCGGGCGC GGGCGCGACC GTGTGCCGGA ATGGCGCGGT CGTTACGATC
GACGGCGTCT CCGTCGCCAC CGCGCGGGAA CGCGACCGGC TCGGCCGGCC GCTGCCGCGC
TGGTCGGGCT GCCGCCTCCT GAACGCGAGC GAGCTGTTCC TGCTCGCGAC GGAGAGCCCG
GATTCATTTG ACGGGCGCTA TTTCGGGCCC GCCGCACGCT CGAATGTCGT CGGGCGCGCG
ATGCCGCTGT GGACTCGCCC GTGA
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| Protein sequence | MHRPPLRLVW NVSPSVPVGL YRIDSAGDPR PGDLVALRPS PDLTRLMAER HYVEAGALLL
KPIAAGAGAT VCRNGAVVTI DGVSVATARE RDRLGRPLPR WSGCRLLNAS ELFLLATESP
DSFDGRYFGP AARSNVVGRA MPLWTRP
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