| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0165 |
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| Symbol | |
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| ID | 5197044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 158192 |
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| End bp | 158926 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640579704 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_001260674 |
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| Protein GI | 148553092 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.440181 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.260138 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCTA TCCGCACCTT CTTTGTCGGC GCCGCCGCGC TGGCGCTGCT CGCCGCGCCG
CCCGCGTCCG CGCAGATCAC GGTCTATGAC CCGACCAACT ACTCGCAGAA CCTGCTCTCG
GCGGCCCGCG CGCTCCAGCA GATCAACAAC CAGATCACCT CGCTGCAGAA CGAGGCGGCG
ATGCTCCTCA ATCAGGCGCG CAACCTGACC TCGCTCCCGA CCAGCACCTT GTCGCAGATC
CAGCAGTCGA TGGACCGCAC GCGCCAGCTG ATCGGCGAGG CGCGACAGAT CGCCTACAAT
GTCCAGGACA TCGACCGCGT GTTCGACCAG CGTTATCCGG CGGGATCGCT CGCCGGAACC
AGCCACGGCC AGATGGTCGG GAACGCGGAA GACCGCTGGC GCGATGCGGT GGCGAGCTTC
CAGGATGCGC TGCGCACGCA AGCGACGATC GTCACCAACC TCACCGACAC CCGCCGCGAG
CTCGACACTC TGGTCGGGGC CAGCCAGGAC GCGACCGGCG CGCTGCAGGC GGCGCAGGCG
GGGAACCAGC TCGTCGCGCT CCAGACCAGG CAGATTGCGG ACCTGACCGC GCTGGTCGCC
GCGCAGGGCC GCGCCGCCGC GATCGAGGCG GCGCGCGCCG CAGCGGACGA GGCGCAGGCG
CGCGAGCGCG GTCGCCGGTT CATCGGTACG CGCAGCGAAT ATCGTCCGCG CAGCGTGACA
ATCTTCAATG ACTGA
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| Protein sequence | MTPIRTFFVG AAALALLAAP PASAQITVYD PTNYSQNLLS AARALQQINN QITSLQNEAA
MLLNQARNLT SLPTSTLSQI QQSMDRTRQL IGEARQIAYN VQDIDRVFDQ RYPAGSLAGT
SHGQMVGNAE DRWRDAVASF QDALRTQATI VTNLTDTRRE LDTLVGASQD ATGALQAAQA
GNQLVALQTR QIADLTALVA AQGRAAAIEA ARAAADEAQA RERGRRFIGT RSEYRPRSVT
IFND
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