Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_39350 |
Symbol | |
ID | 8389256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 4260125 |
End bp | 4261732 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644977945 |
Product | predicted integral membrane protein |
Protein accession | YP_003135704 |
Protein GI | 257057872 |
COG category | [S] Function unknown |
COG ID | [COG5650] Predicted integral membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.658608 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCAGCG ATAGTTATGG TTCGCAGCAG ACTTCGACGC CCGACACCGC GTCGCTGGAC GCATCACAGC GGGTGATCCC GAGTTGGTCG GACCCGCTCG CGGAGGCGGT GACCCGCCCC GTGGGCGGGC CGCTCGGTCG CCACGCGGCC GTGGGCCGGC ACTGGTTCTG GACTCCGCTG CGCGTCTGTC TGCTGCTGGC GGTCCTCGGT CTCACGGCGG GCTGGTTCGG TAAGGCCGCG TGCATCCAGC AGTACGTCAC CGAACAAGGT GACATCGAGC TCGACTGGCG ATCGGGCAGA CAGTACGTGG CGATGTGCTA CTCCGACATC GTCCCGCTCT ACACCGCCGA GCGGCTCGAC GAGGACGGCA CCTTCCCGTA CGCCACAAGC TGGGTGGAGA ACGAGGGCAC CGAGTACGAA CAGGTGCGCT ACATGGAGTA CCCCGTGTTG AGCGGCCTGT TCCAGTGGGT CAACGCCAAA CTCGCGCATG GCTGGGACGA CGCGGCCGAG TCGGGCTGGT TGCCGGGGGC ACTGCCCGTG GTGGTGTATT TCAACATCAC GGCGTTCTTC CTGTCCGCGG CATGGTTGAT CACGGTCTGG GCGGTGGCCA GAACCGCACG ACATCGGATC TGGGACGCGG CGCTCGTGGC CGTGTCACCG CTCGTGGTCG TGCACGCGTT CACGAATTTC GACGCGCTCG CCACCGCCGC GGCCGCGACG GGGCTGTTGG CCTGGGCCCG GAGGAAACCG GTCCTCGCGG GCGTGCTGTT GGGGGTCGGA GCCGCGGCGA AGCTCTATCC ACTGTTCTTC CTCGGACCGC TGCTCGTGCT GTGTGTCCGT GCGCAAAGGC TCAAGGTGTG GGCGCGTACC GCCGGCGCCG CGGCCACGAC GTGGGCCGCC CTCAACCTGC CCTTCATGGT CTTCCTCCGT GAGGGATGGG CGGAATTCTT CAGGCTCAAC ACCCAGCGGG ACATGGACCC CGACTCGCTG TACAACGTGA TCTCGTACTT CACGGGATGG CAGGGCTTCG ACGGTCCGCT CGGGCCGGGG GAGTCGCCGG CGATCTTGAA CGCGGTCAGC GGTGCCCTGT TCCTGGCGTT GTGCGGAGGT ATCGCCTACG TCGCGCTGTC GGCCCCACGG CGACCACGAG TGGCGCAGCT GTGTTTCCTC GTCGTGGCGG CGTTCCTGTT GACCAACAAG GTGTGGAGTC CGCAGTACTC GCTGTGGCTG GTACCGCTGG CCGTGCTGGC CATTCCGCGT TGGCGGCTGC TGTTGGGCTG GATGGTGGTG GACGCGCTCG TATGGGCCCC GCGCATGTTC TACTACCTCG GCGTGAGCAA CAAGGGCCTG CCCGAAGGCT GGTTCCTCGG CACGGTCGTC GTGCGTGACG TCGTGGTGGT CCTGCTCTGC GTGTTGATCC TCCGGGAGAT CTACCGGCCG GCACAGGATG CGGTACGGGT CCACGGTGTG GACGATCCCG TGGGTGGGGT TCTCGACGGC GCCGAGGACC GCGTCGTCCT CCCCCGTCGT GGGCGGCGTG GTGGCGGCGA GCAACCCACC TCGGCGGATC AGAGTCGCGC GCGCAGGAAC TCGATGTCGG TGGCCTGA
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Protein sequence | MSSDSYGSQQ TSTPDTASLD ASQRVIPSWS DPLAEAVTRP VGGPLGRHAA VGRHWFWTPL RVCLLLAVLG LTAGWFGKAA CIQQYVTEQG DIELDWRSGR QYVAMCYSDI VPLYTAERLD EDGTFPYATS WVENEGTEYE QVRYMEYPVL SGLFQWVNAK LAHGWDDAAE SGWLPGALPV VVYFNITAFF LSAAWLITVW AVARTARHRI WDAALVAVSP LVVVHAFTNF DALATAAAAT GLLAWARRKP VLAGVLLGVG AAAKLYPLFF LGPLLVLCVR AQRLKVWART AGAAATTWAA LNLPFMVFLR EGWAEFFRLN TQRDMDPDSL YNVISYFTGW QGFDGPLGPG ESPAILNAVS GALFLALCGG IAYVALSAPR RPRVAQLCFL VVAAFLLTNK VWSPQYSLWL VPLAVLAIPR WRLLLGWMVV DALVWAPRMF YYLGVSNKGL PEGWFLGTVV VRDVVVVLLC VLILREIYRP AQDAVRVHGV DDPVGGVLDG AEDRVVLPRR GRRGGGEQPT SADQSRARRN SMSVA
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