Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_36250 |
Symbol | |
ID | 8388946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3946432 |
End bp | 3948594 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644977639 |
Product | membrane carboxypeptidase (penicillin-binding protein) |
Protein accession | YP_003135406 |
Protein GI | 257057574 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.808415 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTATCC GGAGCGGTCT GTTCAAGCTG TTGGGTCTGT GCCTGCTCGC AGGCGTCCTT GTCGCCGGGA TTCTGTTTCC CGTTACCGGA GCCGCGGGCG TGGTCGCCAA TCAGGCAAGT GACACGGTGG ACTCGATGTC GACCGACCTT GCCGAGGAGC CTCCCCCACT AATCACGACC CTCACCGACA GGGATGGCAA ACCAATCGCC ACCCTGTACG ACCAGTACCG CATTCCCACT GCCCCGGACG AGATTTCCGA GGCCATGAAG TGGGCGATGA TCTCGGTGGA GGACCGCCGT TTCTACGATC ATCACGGCGT CGACTGGAAA GGCACGCTCC GCGCCGCCAT CACCAACACT TCCGGGGGTG ACACCCAGGG CGCTTCCACG TTGACACAAC AGTATGTGAA AAATTATCTG ATCAATGTCA CTCACCGGGG TGACACACTG GGGCAACAAA AAGCTCAGGA AGTGTCGATA GCCCGGAAAC TCAAGGAAGC CCAGATCGCC ATTCAGCTGG AAACGAAGAT GACGAAGGAG GAAATCCTCA CCGGATACCT CAACGTCGTC GAGTTCTCCC GGCAAATTTA CGGTGTCGGC GCAGCGGCCC GCGCCTATTT CAACACCGAG GCTTCGAAAC TCACGGTGCC CCAGGCCGCC CTTCTGGCCG GCATGGTGAA CAACCCCGCC GTGCTGGACC CCTGGAACAA TCCGGAAGGG GCGAAGAAAC GGCGCAACTT CGTGCTCGAC AAAATGGTCG AAAACCGCAA ATTGGACCCC GAGGACGCTG AACGGATCAA GGAGGAACCG TTGGGCGTGC TCCCCGGTGG TCCGAACAAA CCCGCGTCCA CCTGCATCAG CGCGAAACCG GCGTACGGCT TCTTCTGTCA ATACGTCGAG GACTACCTGA TCGACCTCGG CATGGACAAG GACGACCTCT ACACGGGTGG TTACACCATT CGCACGACGA TGGACTCCAA GGCCACCGAG GTCGCCAAGG ACGCGGTCGA GAAGGAGGTC AGCAAGACCG AACCCAACGT CGCCAACACG CTGTCCCTGG TGAAACCGGG CAAGGACCGG CACGAGGTGG TCGCGCTCGT CGCCAACAAG GACTACGGCA CGGACAAGGA AGCCGGACAG GCCTCACAGG GTCTGCCGTA CGACGTCTTC AACGTCACGG GCGCCGGCTC CAGCTACAAG ATCTTCACCG CCGCCGCCAC GCTGGAGCAG CGCAAGTACG GCATCTTCGA CACGGTCCCG GTGCCGAACT TCCACGTCTC CCCGGTGTTC AACTGGGGTG GCGAACACTG CCCGACCCGG CCTTCGGGCA TCCGCACCTA CTGCGTCAAG AACGCCAGCG ACGGTGGCGA CACCTCGATG TCCCTGCAGG ACGCTCTGGC CAAATCGCCC AACACCACGT TCGTCATCCT CGAAGAGGAA GTGGGCATGA AGGCGGTGGT CGAAATGGCC AGCAAACTGG GCCTGCGCAA GACGATGGCG TCGCGGCCCG CCGACGGGAA CGTGCCCGAC CCCGACCACG AGCGGCCCGA GTACAGCATG AACCAGATCG AGTTCTACGG GCCGAACGAG TTGGCACCGC AGGGCCGGGG GATGTTCACG CTCGGCGCCA GTCCCGTCAG TGGCCTGGAG ATGGCCAACG TCGCCGCGAC GATCATGAGT GGTGGCGTGT GGTGCCCGCC CACACCGATC CTGGAGGTCA TCAACCGGGG CGGCAAGGAG TTCCCGGTCA AGGACAAGCC CTGCGAGCAG GTGGTACCGG AGGGCTTGGC GAACACGCTC GCCGTCGGCC TGAGCAAGGA CACCGCCCCC GGCGGCACGG CGTACAACGC CGCCTCCTCG GCGGGCTGGG ACCGCCCGAT GCTCGGTAAG ACCGGGACGA CGCAGTTCCA GGGGTCGGCC ACCTTCGTCG GTGCGACCCC GCAGCTGGCC GGCGCGGCGA TGATCTTCCG ACCGGACCTG CCGCACGGTG GCCTGGTCGA CGGTGGCCCC GGCAACGTCC ATGCGACCAG TTACGGAAAC AGCAACATGT TCGGCGGTAA GACGCCGGCG CGCACCTGGT TCAGGGCGAT GAAGCCGATC ATGGAGGGAC TGCCCAAGAA GCCACTTCCG GAACCCGACC CGCACTACGC GAAGGTGCGG TAG
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Protein sequence | MSIRSGLFKL LGLCLLAGVL VAGILFPVTG AAGVVANQAS DTVDSMSTDL AEEPPPLITT LTDRDGKPIA TLYDQYRIPT APDEISEAMK WAMISVEDRR FYDHHGVDWK GTLRAAITNT SGGDTQGAST LTQQYVKNYL INVTHRGDTL GQQKAQEVSI ARKLKEAQIA IQLETKMTKE EILTGYLNVV EFSRQIYGVG AAARAYFNTE ASKLTVPQAA LLAGMVNNPA VLDPWNNPEG AKKRRNFVLD KMVENRKLDP EDAERIKEEP LGVLPGGPNK PASTCISAKP AYGFFCQYVE DYLIDLGMDK DDLYTGGYTI RTTMDSKATE VAKDAVEKEV SKTEPNVANT LSLVKPGKDR HEVVALVANK DYGTDKEAGQ ASQGLPYDVF NVTGAGSSYK IFTAAATLEQ RKYGIFDTVP VPNFHVSPVF NWGGEHCPTR PSGIRTYCVK NASDGGDTSM SLQDALAKSP NTTFVILEEE VGMKAVVEMA SKLGLRKTMA SRPADGNVPD PDHERPEYSM NQIEFYGPNE LAPQGRGMFT LGASPVSGLE MANVAATIMS GGVWCPPTPI LEVINRGGKE FPVKDKPCEQ VVPEGLANTL AVGLSKDTAP GGTAYNAASS AGWDRPMLGK TGTTQFQGSA TFVGATPQLA GAAMIFRPDL PHGGLVDGGP GNVHATSYGN SNMFGGKTPA RTWFRAMKPI MEGLPKKPLP EPDPHYAKVR
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