Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_28870 |
Symbol | |
ID | 8388211 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3134619 |
End bp | 3135827 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644976918 |
Product | arabinose efflux permease family protein |
Protein accession | YP_003134693 |
Protein GI | 257056861 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.447315 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAAGT TGGTAACTAC CACGACAGCG CCCCGGATGA GCGACGCTCT CCGCAACCGG GAGTTCCGTG CCCTGTGGTT CGCGGAGGCC CAATCAGTCC TCGGCGACCA TCTGACGACG GTGGCGTTGT CCATCGTGGT GTACGGCCGC ACGGGTTCGG CGTTATGGGC AGCCGTGGTG TACGCGCTGA CCTTCCTGCC CGCTCTCGCG GGTGGTCTCG GACTCTCCCA GATCGCCGAC AGACGGCCCC GGAAAACCGT GCTCGTCGTG TCCTTCGTCA TGCAGGCGGT GTTCGTGGGG ACCATGGCGA TCCCCGGAAC ACCGCTGGCC GTGCTGGTCA CGCTGGTCGT GTTGGCCCGG CTGGCCGGAG CACCGGCCAA CGCGGCACAA AACGCGTTGA CCAGGGAGGT CTTCGCCGAC GACGAGCTGT ACCTGCGCAG TCAGGACCTG CGGGGTATCA CCACCAACAT CGGCATGCTC ATCGGTCTCG GCGGCGGGGG GTTGCTGGTC ACGTCGCTCG GCCCCTCGTG GGCGCTGGCC CTTGACGCCC TGACCTTCCT CGTGGCCGCG GCGCTCGTGC AATTCTCGGT GCGACAGCGT CCCGTTCCCG GCGACCCTGG CGACGGTTGG TTCAGCGCCG TGCGATGGGT ATGGGGACAA CGCCGCTTAC GAGTGTTGCT GGCGCTGTCC TGGTTGGTGG GCCTCGCGGT GATCCCCGAA GGGCTCGCCG CTCCACTCGC CCACCAGATC GGCGCCTCAG AACAGGCCGT GGGGTGGTTG TTGGCCGCTG ATCCCGTGGG CTTCATCCTC GGGACGTTCG TGCTTTCCCG GTTCGTCTCA GCCCAGAACC GCAAGCGCAT CATGGGCGTG CTGGCCACAC TGGCCGCAGC GGTCCTCATC GGTTTCGCAG CGACCCCCAC TCTGCCCTTC GCTCTGTTGC TGTTGATGCT CGCTGGCGCC GCGGGTGCCT ACATCATCAC CGTGGGCGCC ACCTTCATCA CGTGGGTCCC CAACGAGTTA CGCGGAGGCG CGGGCGGCGT CTACCGCACC GGCCTCCGCG TCGCACAGGG TTTGGGTGTC GCACTCGGCG GCGTGATCGC GGATCTCGTC GGATCCGCGA CGTTCACGAT CGCCCTCGCC GGAATGGCGG GTGTCGTACT CACGATCCCG GTCGCCGTGT CCTGGGCGCG CATCCTGAAG ACCCAGTGA
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Protein sequence | MTKLVTTTTA PRMSDALRNR EFRALWFAEA QSVLGDHLTT VALSIVVYGR TGSALWAAVV YALTFLPALA GGLGLSQIAD RRPRKTVLVV SFVMQAVFVG TMAIPGTPLA VLVTLVVLAR LAGAPANAAQ NALTREVFAD DELYLRSQDL RGITTNIGML IGLGGGGLLV TSLGPSWALA LDALTFLVAA ALVQFSVRQR PVPGDPGDGW FSAVRWVWGQ RRLRVLLALS WLVGLAVIPE GLAAPLAHQI GASEQAVGWL LAADPVGFIL GTFVLSRFVS AQNRKRIMGV LATLAAAVLI GFAATPTLPF ALLLLMLAGA AGAYIITVGA TFITWVPNEL RGGAGGVYRT GLRVAQGLGV ALGGVIADLV GSATFTIALA GMAGVVLTIP VAVSWARILK TQ
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