| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_19600 |
|---|
| Symbol | |
|---|
| ID | 8387287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2087428 |
|---|
| End bp | 2090514 |
|---|
| Gene Length | 3087 bp |
|---|
| Protein Length | 1028 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644976024 |
|---|
| Product | transposase, TnpA family |
|---|
| Protein accession | YP_003133806 |
|---|
| Protein GI | 257055974 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4644] Transposase and inactivated derivatives, TnpA family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.546457 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.0923144 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCAGTTG AGTTCCTGCC CGATGAGCAG GCTGCGGCCT ACGGCCGGTT GCCCGAGGTG
TTGTCGCGGG CAGAGTTGGA GCGGTTCTTT TTCCTCGACG ACGTCGACCG GGGCCTGGTG
GAGGCCAAGC GGCGCGATTA CAACAAGCTC GGGTTCGCGC TCCAGCTCGT GACGGTGCGC
AACGTCGGGG CGTTCCTCGA TGACCCGCTG GACGTGCCGG TCGAGCTGGT CGACTATCTC
GCCGAGCAGC TCGGAATCGT GGACTCGTCG TGCGTGAAGT CCTACGGCGA GCGGGAGAAG
ACCCGCTTCG AGCACGTCTG GGAGCTGCGC CAGGCCGGTG GCTGGCACGA GTTTTCGGTG
GTGGAGAACG AGCTCGGCGA GTGGATCGAG GCCCGCGCCT GGACCACCGG AGACGGGCCG
AAGGCGCTGT TCGACGTCGC GGTCTCATGG CTGCGAGAGC GCAAGGTGCT GCTGCCAGGC
GTGACCCGGC TGGTCCGGCT GGTCGCCGCC CGGCGAGAGG CGGCGAACCG GCGGTTGTGG
GAGACGCTGT GTGATCTGCT TGACGACGAG CAGCGCGCCG CGCTGGATGG GTTGTTGGAG
GTGCCGGAGG GGCACCGGAA TTCGCGGTTG GACACGCTGC GGCGGCCGCC GGTGCGGGTG
TCGGGTCCGG CGATGGTCGA TGCCCTTCAG CGCGCGTCGG AGATCCTCGG GTTGGGGTTC
GTCGAGGTGG ACACTGAGGT GGTGCCGCCG CGCCGGTTGG CGGAGTTGTC GCGGTATGGG
GTGCAGGGCA AGGCCAGTTT GCTGCGTCGT CACGGTGATT CCCGGCGGGC GGCGACGCTG
TTGGCCACGG TGGTCTACCT GCAAACTCGG GCAGTCGATG ACGCCCTGGA TCTGCTGGAT
GTGCTGATCG CCTCGAAGCT GCTGGCGCGG GCGGAGCGGG AATCGGCCAA GGAGAAGCTG
CGCACCCTGC CCAAGCTGGG CAAGGCGTCG GCGAAGCTTG CGGCCGCGCT GGGGGTGTTG
CTGGAGGTGA CCGGCGCGCA CGATGGCCTG GCCGAGCAGG CCGCCGACGA CGGCGACACC
ATCGAGCCGG TCAGTTTGGC GCAGGTGTGG GCCGAGATCG AGGCCGTGGT GCCCCGCGCC
GAGCTGGCCG AGGCTCTGGT CGCGGTGGTG GAGCTCGCGG GGCCGCTGGA CTCGGATGCG
GATGAGGCGT GGCGGGCGGA GTTGGTGAAG CGGTTCGTCA CGGTGCGGCC GTTCCTGCCG
TTGTTGTGTG AGGTGATCCG CTTCGGCGCC GCGCCCGAAG GGCGTCAGGT GCTGGCGGCG
TTGCGGGATC TGCCTCGGTT GTGGGGCGGC GGCCGCAACA AGGTCGCCCG CTCCGAGATC
GACGAGCAGC TGCTGATCGG CTCGTGGCGC AGGTTGGTGC TGCACGCCCC GGAGCTGGAG
CCAGGGACGA TCGATTGGCG GGCTTACACC TTCTGTGTGC TGGAGCAGTT CCACCGCTGT
TTGCGGCGTC GGGACATCTT CGCGGTCAAC TCCAGTAAGT GGGGCGACCC GCGCGCCAAG
CTCCTCGCCG GCAGTGCGTG GACCACCGCG AAGCCGGTGG TGCTGTCCAG TCTCGGACTG
CCACCCGACC CGAACGAGCA CCTCGACGAG TGCGCCGAGC TGTTGGACGC CACCTTCCGC
GAAGTCACAG CGGGACTGCC GGAGAACACC GCGGTGCGCT TCGACGAGGA CGGCCGCCTG
CACCTCTCAG CGCTGCCAGC GGAGGCGGAG CCGCCGAGCC TGGCCAACCT GCGGGCGCTG
ACCAACCGGA TGCTGCCCCG CGTCGACCTT CCGGAGGTGT TGCTGGAGGT CTTCTCCTGG
ACCGGCGCCG ACCAGGCGTT CACCTCGATC ACCGGCGGCG AAGCCCGCCT GGCCGACCTG
CACATCACCA TCGCCGCGCT ACTGGTGTCC GAGTCCTGCA ACATCGGCTG GACTCCAGTG
ATCAAGCACA GCGTGCCGGC GTTGACGCGG GATCGTCTGG CGCACGTGGA CGCGACCTAC
CTGCGGATGG ACACCCTCAA AGCCGCCAAC ACCTTCCTGA TCGAGCACCA GGCCCGCATC
GGCCTTGCTC AGGTGTGGGG CGGCGGGCAC GTGGCCAGTG TCGACGGGAT GCGGTTCGTC
GTGCCGGTGC AGACCATCAA TGCCCGCCAC AACCCGCACT ACTGGGGCCA GAAACGGGGC
GCGACCTGGC TGAACATGGT CAACGATCAG GCCGCCGGGC TCGCCGGGAA GGTCGTGGCG
GGCACCCCAC GCGACTCCCT GCACGTGCTG GACGTGCTGT ATGACCGCGA CGGCGGGCAG
AAACCGCAGA TGATCGTCAC TGACACCGCC TCCTACTCCG ACATCGTCTT CGGGCTGCTC
ACTCTCGCCG GGTACACCTA CGCCCCGCAG TTGGCCGACC TGCCCGATCA GAAGCTGTGG
CGCATCGACA CCCGCGCCGA CTACGGGCCC TTCACCACAG CGGCTCGCGG CCGCATTGAT
CTCGACCGGA TCCGGCGGCA CTGGGAGGAC ATCCTGCGCG TGGTCGCCTC GATCCACACC
GGTGCCGTCC GCGCTCACGA CGTGATCCGG ATGCTGTCCC GCGACGGCCA CCCCACCCCG
TTGGGTGAGG CGATCGCGCA CTACGGCCGG ATCCACAAGA CGCTGCACGT GCTGCGGATG
GTCGACGACA CCGGCTACCG CCGCGACATC AAAGCCCAGG CCAACCTCCA GGAAGGCCGC
CACGCCTTGG CCCGGCGGAT CTTCCACGGC CAGCGCGGCG AACTACGCCA GCGCTACTAC
GAAGGCATGG AAGACCAACT CGGCGCCCTG GGCCTCGTCC TCAACGCGAT CGTGCTGTTC
ACCACCCGCT ACCTGGATGC CGCCATCACC GAACTCCGTG CCGGCGGCTA CGAAGTCCAC
GACGAAGACG CGGCCCGGCT CTCGCCGTTC GTACGCCACC ACATCAACAT GCTCGGCCGG
TATTCGTTCC TGCTCCCCGC CGATCTGGCC CAGGGCCTGC GGCCGCTGCG TGATCCGTCC
GAGCCCGACG AGGACAACGA ACGGTGA
|
|---|
| Protein sequence | MPVEFLPDEQ AAAYGRLPEV LSRAELERFF FLDDVDRGLV EAKRRDYNKL GFALQLVTVR
NVGAFLDDPL DVPVELVDYL AEQLGIVDSS CVKSYGEREK TRFEHVWELR QAGGWHEFSV
VENELGEWIE ARAWTTGDGP KALFDVAVSW LRERKVLLPG VTRLVRLVAA RREAANRRLW
ETLCDLLDDE QRAALDGLLE VPEGHRNSRL DTLRRPPVRV SGPAMVDALQ RASEILGLGF
VEVDTEVVPP RRLAELSRYG VQGKASLLRR HGDSRRAATL LATVVYLQTR AVDDALDLLD
VLIASKLLAR AERESAKEKL RTLPKLGKAS AKLAAALGVL LEVTGAHDGL AEQAADDGDT
IEPVSLAQVW AEIEAVVPRA ELAEALVAVV ELAGPLDSDA DEAWRAELVK RFVTVRPFLP
LLCEVIRFGA APEGRQVLAA LRDLPRLWGG GRNKVARSEI DEQLLIGSWR RLVLHAPELE
PGTIDWRAYT FCVLEQFHRC LRRRDIFAVN SSKWGDPRAK LLAGSAWTTA KPVVLSSLGL
PPDPNEHLDE CAELLDATFR EVTAGLPENT AVRFDEDGRL HLSALPAEAE PPSLANLRAL
TNRMLPRVDL PEVLLEVFSW TGADQAFTSI TGGEARLADL HITIAALLVS ESCNIGWTPV
IKHSVPALTR DRLAHVDATY LRMDTLKAAN TFLIEHQARI GLAQVWGGGH VASVDGMRFV
VPVQTINARH NPHYWGQKRG ATWLNMVNDQ AAGLAGKVVA GTPRDSLHVL DVLYDRDGGQ
KPQMIVTDTA SYSDIVFGLL TLAGYTYAPQ LADLPDQKLW RIDTRADYGP FTTAARGRID
LDRIRRHWED ILRVVASIHT GAVRAHDVIR MLSRDGHPTP LGEAIAHYGR IHKTLHVLRM
VDDTGYRRDI KAQANLQEGR HALARRIFHG QRGELRQRYY EGMEDQLGAL GLVLNAIVLF
TTRYLDAAIT ELRAGGYEVH DEDAARLSPF VRHHINMLGR YSFLLPADLA QGLRPLRDPS
EPDEDNER
|
|---|
| |