| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_09870 |
|---|
| Symbol | |
|---|
| ID | 8386324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 1013983 |
|---|
| End bp | 1014870 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644975077 |
|---|
| Product | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG |
|---|
| Protein accession | YP_003132871 |
|---|
| Protein GI | 257055039 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1191] DNA-directed RNA polymerase specialized sigma subunit |
|---|
| TIGRFAM ID | [TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.84003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTGT CGACCACCGA AGAGCCGGAA CCCGCCCTCC AGCCGGATGC GGTGACGGCC
ACCGGTGACA AGGTGCCGGC CACCGGTGAC AAGACGGGCG CTGATGAGGC AAACACCGCC
GATTCGGCCA TCCAGGCCCT GTGGAAGGAA TTCGTACGCT CGCCGAGCCA GCGCGTCCGT
GACCGCCTCG TGCTGCACTA TGCCCCGCTC GTCAAGTACG TGGCGGGTCG AGTGGGAACG
GGACTACCCA CACACATCGA TGTCGCAGAC CTGATCCAGT CGGGCATCTT CGGCCTGGTC
GACGCCATCG AGAAATTCGA CCCGGAGCGG GGGTTGCGCT TCGAGACGTA CGCCATGCAG
CGTATCCGTG GTGCCATCCT CGACGATCTA CGTTCCCAGG ACTGGGTGCC CAGGGCCGTG
CGGAGTAGGG CCCGTGAGAT CGAACGCGCT CACGAACGCT TGGGCGCGCG TCTGCGCCGG
ACCCCGACCG ACGCGGAAGT CGCCGCGGAG TTGGGGATCA CGCTGCGGGA ATTGCGGGAC
CTGTACGGCC AGCTGCGGTT GACGAGCGTG CTCGCGCTCG ACGACCTCAT GGGGGCGAGC
AAGGACAACG GCAACGGCAC GGGCTCACCC GCCGACACCC TGCCCGACGA TGGTGCTGTC
GACCCGGCCG CCGTGCTGGT CGACCAAGAC AACCGCAGGC AGCTCGCCGA GGCGATCGCG
CAGCTCAACG AGCGTGACCG CATCGTGGTC AGCCTCTATT ACTTCGAGAA CCTGACGTTG
GCCGAGATCG GCAAGGTGCT GGGGGTCACC GAATCGCGGG TCAGCCAGCT TCACACGCGC
GCTGTGTTGC GACTTCGGGC CAAGCTCGTC GAGAACGCCA ATTCCTGA
|
|---|
| Protein sequence | MSVSTTEEPE PALQPDAVTA TGDKVPATGD KTGADEANTA DSAIQALWKE FVRSPSQRVR
DRLVLHYAPL VKYVAGRVGT GLPTHIDVAD LIQSGIFGLV DAIEKFDPER GLRFETYAMQ
RIRGAILDDL RSQDWVPRAV RSRAREIERA HERLGARLRR TPTDAEVAAE LGITLRELRD
LYGQLRLTSV LALDDLMGAS KDNGNGTGSP ADTLPDDGAV DPAAVLVDQD NRRQLAEAIA
QLNERDRIVV SLYYFENLTL AEIGKVLGVT ESRVSQLHTR AVLRLRAKLV ENANS
|
|---|
| |