| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Svir_00020 |
|---|
| Symbol | |
|---|
| ID | 8385340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharomonospora viridis DSM 43017 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013159 |
|---|
| Strand | + |
|---|
| Start bp | 2762 |
|---|
| End bp | 3901 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644974108 |
|---|
| Product | DNA polymerase III subunit beta |
|---|
| Protein accession | YP_003131923 |
|---|
| Protein GI | 257054091 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000000251098 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.535088 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCC GCGTCGAACG CGATGGGCTT GCCGAGGCCG TCGCATGGGT GGCCCGGAGT
CTGCCGTCGA GGCCGCCCGT TCCCGTGCTT GGTGGGGTCC TCCTCGACGC AGGCGGTGAC
TCCGGCGACG GCGCGGACAC TTTGACCATC TCCGGCTTCG ACTACGAGGT CTCGGCCACG
GCCGGTGTTC CTTCGACCAT CGCCGAAGGT GGCCGCACGC TGGTGTCGGG TCGCTTGCTC
GCCGACATCA CCAAGGCGTT GCCCGCCCAG CCCGTGGACA TCTCCGTCGA GGGCGCTCGG
GTGTCCATCA CCTGCGGAAA CGCCAAGTTC AGCCTGCCCA CCATGCCGGT CGAGGACTAC
CCCGAGTTGC CCGCCCAGCC CGAACTGGCG GGCGAGGTCG CGGGTGACGC GTTCGCCCAG
GCCGTGGCCC AGGTGGCCGT CGCAGCGGGC AAGGACGACA CGCTGCCGAT GCTCACCGGC
ATGCGTGTCG AGATCACCGG CAGCACACTC ACCCTCGTCG CCACGGACCG GTTCCGCCTC
GCCATGCGCG AGTTCAGCTG GCAGCCCGCC GAGGGCATAA CCGATTCGGC GGTGCTCGTC
CCCGCCCGTA CCCTCGCGGA CGCCGCCAAG TCGCTCGGCT CCGCCGGCAC GACGGTGCAG
ATCGGTCTGG CGGGCGGCGA CGGATTGCTG GGGCTGTCCG GTGGTGGCAA GTTCACGACC
ACGCGGTTGA TCGACGCCGA GTTCCCGCCG TACCGGCAGC TGCTGCCGTC CGACTACTCC
TCGCGCGCGA TTCTGCACGT ACCCGCGCTC ACCGAGGCGA TCAAACGGGT GTCGCTCGTC
GCCGAACGGG GCACTCAGGT CAGGTTGGAG TTCGAGGACG GTTCGCTGCG GTTGGCGGCC
GGAGGTGACG ACGAAGGCAG TGCGGAGGAG GAACTCCCCG TCGACTACGA GGGGGAACCG
GTGACCATCG CGTTCAACCC CTCTTACCTC GCCGACGGCC TCGGCGCTCT GCACGCCGAA
CGGGCCGAAC TGACGTTCAC GACACCCAAC CGGCCCGCGT TGATCAAGCC CGCCGATGAC
AACGGCGAAG TCGTGCCCGG CTATCTCTAC CTGTTGATGC CGGTGCGGCT TCCTGGCTGA
|
|---|
| Protein sequence | MKIRVERDGL AEAVAWVARS LPSRPPVPVL GGVLLDAGGD SGDGADTLTI SGFDYEVSAT
AGVPSTIAEG GRTLVSGRLL ADITKALPAQ PVDISVEGAR VSITCGNAKF SLPTMPVEDY
PELPAQPELA GEVAGDAFAQ AVAQVAVAAG KDDTLPMLTG MRVEITGSTL TLVATDRFRL
AMREFSWQPA EGITDSAVLV PARTLADAAK SLGSAGTTVQ IGLAGGDGLL GLSGGGKFTT
TRLIDAEFPP YRQLLPSDYS SRAILHVPAL TEAIKRVSLV AERGTQVRLE FEDGSLRLAA
GGDDEGSAEE ELPVDYEGEP VTIAFNPSYL ADGLGALHAE RAELTFTTPN RPALIKPADD
NGEVVPGYLY LLMPVRLPG
|
|---|
| |