Gene Suden_1344 details

Gene Information

• Locus tag: Suden_1344
• Symbol: ligA
• ID: 3763474
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sulfurimonas denitrificans DSM 1251
• Kingdom: Bacteria
• Replicon accession: NC_007575
• Strand: -
• Start bp: 1415861
• End bp: 1417819
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 38%
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_393857
• Protein GI: 78777542

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.0984066
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAG AGCAATATAT AAAAGCAGTA GAGCTTCTAA ACCTCTACTC TTACCACTAT 
TATGTCCTAG ATGATGCAAT CACAACTGAT GAAGTTTATG ATAAGCTTTA CCATGAGGTT 
TTAGAGTATG AAGAGAGTCA TAAAGAAGAT ATCTTAAAAA ACTCTCCGAC TCAAAGAGTA 
GGGGACACGG TCTCTGAGGG ATTTTCAAAA GCCCCTCATC TAAGCCGTAT GTGGAGTTTG 
GAAGATGTTT TTGACTCCGA TGGTTTGCAA AAGTGGCTTA TAAAAACTTA TAAACTAGAT 
AGTAATATCT CATTTTACTG TGAGCCGAAG TATGACGGTG CGAGTTTGAA TCTTATCTAT 
GAAAATGGTG AACTCTCTCA AGCAATAACA CGCGGTGACG GAGAAGTAGG CGAGCTAATA 
ACCCAAAATG TAAAAACTAT CCGCTCAGTT CCTCTTAGCA TAGAGCATAA AGAAAAAATC 
GAGATTCGCG GCGAAGTAGT AATTTTTAAA GATGAGTTTG AAAAAATAAA CCAAACGAGA 
CTAAAAGATG GCGAAGCACT TTTTGCAAAC CCTAGAAATG CCGCTGCGGG AAGCCTTAGA 
CAGCTTGATT CAAGCATAAC AGCCTCAAGA AACTTAGTTT TTTTACCTTA TGGAGTTGGA 
GAAAATTTTC TTGAACATAA ACTATTAAGT CAAAAGATGG AGTATATTTA TTCACTAGGT 
TTTAAAAAAC CGCCGTTTTG TGCTACATGT AAAGATTTCA ACGAGATAGA AGCGGTGTAT 
CAAGAGATGA GTAGAAATAG AGATAGTTAT CCTATGATGC TTGATGGAAT GGTTGTAAAA 
GTAGATGAGA TAGCCGCACA GATAGATATG GGCTACACTG TTAAAAATCC CCGTTTTTCA 
GTTGCATATA AGTTTCCAGC AGTTGAGAAG ATAACCACCA TAAAAGAGAT TATTCTTCAA 
GTTGGACGAA CTGGTGCGGT CACTCCAGTG GCAATTGTAG AGCCGACAAA CATTGATGGT 
GTAGTTGTTG AGAGAGCAAC TTTACATAAT TTTGATGAGA TACAGAGAAA AGATATTCGC 
ATAAACGATC ATGTTATCAT CCTTAGAAGC GGCGATGTAA TTCCTAAAAT CATAAAAGTT 
TTAACACATG AGAGAGACGG GAGCGAAGTA GAGTATAAGC GACCGACAAT TTGCCCAGTA 
TGTGAGAGTG AGCTTTTAGA TGAGGGCGTA CTTTTAAAGT GTCAAAATCT TACATGTGAA 
GCAAGAGTTA TCAACTCAAT CATCTATTTT GCTTCAAAGC CATGTCTAAA TATCGACGGC 
TTAGGAGTTA AAATAGTTGA GGCTCTTTTT AACTCAGGGC TTGTTAAAAG TGTTGTTGAT 
TTGTTTGATT TGACACTTGA GAAACTCTTA ACACTAGAGG GTTTCAAGGA GAAAAAAGCT 
CAAAACCTGC TTGATGCGCT TGGTAGTGCA AAAGGGTGTG AGTATTGGAG ATTTGTAAAC 
TCTCTTGGGA TTGAGCATAT CGGAGAGGTT GCATCTAAAA CTCTAAGTGC AAAATTTGGA 
AGCGGTTTTA TAGACGCTAC AAAAGATGAG ATAGTCGCAT GTGATGGCGT AGGCGAAGAG 
ATGGCGGAGT CACTTTTAGA GTTTATCAGA GTAAACAGAG AAACTATCCT AAAACTCCAA 
AATATACTAA AACCGCTTGA ACCATTGCAA AGGCAAGAGG CGAAAGAGAA CCCATTTAAG 
GGCAAAAGCG TAGTTCTTAC TGGAAGTATG AGCGAGTCAA GAGATATGAT AAAAGAGATG 
CTAGAGTCTT TGGGTGCAAA GGTAGTATCG AGCGTAAGTA AGAAAACTGA TTTCGTAATT 
TATGGCGAAG ATGCAGGAAG CAAATATGAC AAAGCTATGG ATTTGGGCGT TGAGTGTTTA 
AATGAAGATG AGATGAGGAG CAAAATTGAG CAGGCTTGA 

 

Protein sequence

MKKEQYIKAV ELLNLYSYHY YVLDDAITTD EVYDKLYHEV LEYEESHKED ILKNSPTQRV 
GDTVSEGFSK APHLSRMWSL EDVFDSDGLQ KWLIKTYKLD SNISFYCEPK YDGASLNLIY 
ENGELSQAIT RGDGEVGELI TQNVKTIRSV PLSIEHKEKI EIRGEVVIFK DEFEKINQTR 
LKDGEALFAN PRNAAAGSLR QLDSSITASR NLVFLPYGVG ENFLEHKLLS QKMEYIYSLG 
FKKPPFCATC KDFNEIEAVY QEMSRNRDSY PMMLDGMVVK VDEIAAQIDM GYTVKNPRFS 
VAYKFPAVEK ITTIKEIILQ VGRTGAVTPV AIVEPTNIDG VVVERATLHN FDEIQRKDIR 
INDHVIILRS GDVIPKIIKV LTHERDGSEV EYKRPTICPV CESELLDEGV LLKCQNLTCE 
ARVINSIIYF ASKPCLNIDG LGVKIVEALF NSGLVKSVVD LFDLTLEKLL TLEGFKEKKA 
QNLLDALGSA KGCEYWRFVN SLGIEHIGEV ASKTLSAKFG SGFIDATKDE IVACDGVGEE 
MAESLLEFIR VNRETILKLQ NILKPLEPLQ RQEAKENPFK GKSVVLTGSM SESRDMIKEM 
LESLGAKVVS SVSKKTDFVI YGEDAGSKYD KAMDLGVECL NEDEMRSKIE QA