Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Suden_0353 |
Symbol | rpoB |
ID | 3764734 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sulfurimonas denitrificans DSM 1251 |
Kingdom | Bacteria |
Replicon accession | NC_007575 |
Strand | + |
Start bp | 348090 |
End bp | 352235 |
Gene Length | 4146 bp |
Protein Length | 1381 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_392869 |
Protein GI | 78776554 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTAAATA CTTTATATTC CGGAAATCGT CTTCGTGTAG ACTTCTCTAA AACCCCTCAA CAAATAGAAG TACCAAATTT ATTACAACTA CAACAAAGCT CATATAACAA GTTTTTAATG CTTGAGGAAA AAGATAGATC ACAAAGTGGT GTTGAAACAG TTTTTCAATC AGTTTTTCCA ATTCATGATA CTCAAAATAG ATTGACTGTT GAGTATATTG ATAGTGAAGT TGGAAAACCA AAATACACAG TTAGAGAGTG TATGGAGCGT GGACTCACTT ATGCAGTTAG CTTAAGAATG AAAACGCGTC TTATTCTTTG GGATAGAGAT GAAAATACAA AAGAGAAATT AGGTGTAAAA GATATCAAAG AGCAGAGTAT ATTTGTTCGT GATATTCCAC TTATGACAGA GAGAACTTCA TTTATTATCA ATGGTGTTGA GAGAGTTGTT GTAAATCAGC TTCACCGCTC TCCAGGTGTT ATCTTTAAAG AAGAGGAATC AACTACTTCA GGCAATAAAC TAATATATAC TGGACAGATT ATTCCAGATC GTGGTTCATG GCTCTATTTT GAGTATGATC CAAAAGATAT TCTTTATATG AGAATAAATA AGCGTCGTAA AGTACCAGTT ACAATCATGT TCCGTGCTCT TGGGTACTCT AAACAAGATA TCTTAAAACT TTTTTACCCA ATTCAACATA TTAACATCGT TGATAACAAA TTTTTAATGT CATTTAATCC AAATGATTAC TCTAGCAGAT TAACTTATGA CTTAGTTGAC AAAAATGGAA AAATTCTTTT AGCTTCAGGA AAAAGACTCT CCGCTAAAAA AGCACAAAAT TTTATTGATG AGGGTTTAAG TGAAGTTGAG TATCCATTAG AAGTTCTTTT AGATAGATAC TTGGCAAAGC CAATAGTTGA CCCTGAAACA GGCGAAATTC TCTTTGATGC TATGACAAGA ATTGATGAAA CAAAACTTAA AAAACTGAGT GAAATTGGTG TTAAAAACTT CAGTATTGCG AACGATTTGG CTGAAGGTGT GGATGGTTCA ATTATAAATG CGTTTAATGC TGATGCAGAT TCTCTAAAGT TACTAAAGCA GACTGAAGAT ATAGAAGATG AAAACCATCT CTCAGCGATT CGTATATATA AAGTAATGAG ACCAGGTGAG CCAGTAACAA AAGAGGCTGC AAAAGTTTTT GTAAATCAAC TTTTCTTTGA TCCAGAGAGA TATGATTTGA CAAAAGTCGG TCGTATGAAG ATGAATCATA AGTTGGGGCT AAATATTCCT GAATATATAA CTGTTTTAAC TCATGAAGAT ATTATAGAGT CTGTAAAATA TGTTATCAAA GTTAAAAATG GACAAGGACA TATTGATGAT AGAGATCACT TAGGTAATCG TCGTATTCGT TCAATAGGTG AACTTTTAGG AAATGAGTTA CATAACGGTT TGATTAAGAT GCAAAAAGCG ATTCGTGATA AGCTCTCTAC AATGAGTGGA CCTATGAATG AGCTAATGCC TCATGATTTG ATAAACTCAA AAATGATTAC TTCAACAATC ATGGAGTTTT TCTCAGGCGG GCAGCTATCA CAATTTATGG ATCAAACAAA TCCTCTCTCG GAAGTAACAC ATAAGCGTCG TTTATCAGCT CTTGGAGAGG GTGGACTTGT AAAAGAGCGT GCTGGATTTG AAGTACGTGA CGTTCATCCA ACTCACTATG GTAGAATTTG TCCGATTGAG ACTCCAGAGG GTCAAAATAT TGGTCTTATC AATACGCTTG CAACTTACTC AAAAGTTAAT GAGCATGGAT TTATTGAAGC TCCATATAAA GTAATGAAAG AGGGAAAAGT AACAGATGAG ATTGTTTATT TAACAGCTAC TCAAGAAGAG GGCAAGAAAA TTGCTGCTGC TTCAAATAAG CTAGATAAAG ATGGTCAATT TATAGATAAA ATGGTTGTAA CTAGAGTTGA TGGAGAGATT CTTCACCGTC CTGTTACCGA GTGTAACTAT GCTGACTTGT CATCTCACAT GGTTGTCGGT GTTGCCGCTT CACTAATTCC ATTCTTAGAA CACGATGATG CAAACCGTGC TCTAATGGGT GCAAACATGC AACGTCAAGC CGTTCCTCTT ATTAAACATG AAGCGCCTAT TGTTGGAACT GGCGTTGAAA AACTTGTTGC TCGTGACTCT TGGGAATGCG TAAAGGCAAG ACGTTCTGGT ATTGTAGAAA AAGTAGATGG AAAACATATC TATGTTATGG GAGATGATGA TGGAGAAATC TATATAGATT ACTATCCATT GCAAAAAAAC CTTCGTACTA ACCAAAATAC AGCATTTGGT CAAAAACCAA TTGTAAATAT TGGACAAAGA GTTGAAATTG GTCAAGTAAT CGCCGATGGT CCAAATATGG ATCAAGGTGA ACTTGCTCTT GGTGTTAATG CAATGGTTGC GTTTATGCCT TGGAATGGAT ACAACTTTGA GGATGCTATT GTAATCTCTG AGAGACTTAT TCGTAAAGAT GCTTTTACAT CTGTTCATAT CTATGAAAAA GAGGTTGAAG CAAGAGAGCT AAAACATGGG GTAGAAGAGA TTACTCGTGA TATTCCAAAT GTTAGAGATG ATGAACTCTC TCACCTAGAC GAGAGCGGTA TTATCAAAAT TGGTACGAAT GTAACTGGTG GAATGATACT AGTCGGTAAA GTTTCCCCAA AAGGTGAAGT AAAACCAACT CCAGAAGAGA GACTTCTTCG TGCAATTTTT GGTGAAAAAG CGGGACATGT AATAAACAAA TCTCTTTATT GTCCTCCATC TATGGAAGGT GTTGTTGTTG ATGTTAAAAT CTTTACAAAA AAAGGTTATG ACAAAGATGC ACGTACTCTT GAACTTGAAA AAGAGGAGCG TGACTATTTA GAGCGTGAGC ACTATGATAG ACTTCTTATG ATTGATAAAG AGGAGATGTT AAGAGTTACA AAACTTCTTA CAAAAGAGCC ACTTATAAAC GATATTAAAA TTGGCAACAC AAGTTATAAA GCTGGCGATA TAATCAATGG CGAAGATTTA GTTGAAGTGA ATCGTTTTGC AATGAATGCC ATAATTAAAT CATTCAGTGA AGAGATTCAA TCAGAATATA ATAAAACTAA AAACTATTTC CAAAAAGAGA AAAGACTCTT CCGTGATGAG CATGAAGAGA AGTTAAATAT CCTAGAAAAA GATGACATTC TTCCAAATGG CGTTGTTAAA CATGTAAAGA TATATATTGC AACAAAGCGT CAACTAAAAG TTGGTGATAA AATGGCAGGA CGTCATGGAA ATAAGGGTAT TGTCTCTACA ATAGTACCTG AAGTTGACAT GCCTTACATG GAAGATGGAA GAGGCGTTGA TGTTTGTCTA AATCCTCTTG GTGTTCCATC TCGTATGAAT ATCGGGCAAA TATTAGAGAT GCACCTTGGT ATGGCTGGAC GTGAGTTAGG GCATCAAATA ACTAAAGAGT TTGAATCAAA GCAAAAAGAT TTTATTAAAA ATCTTCGAGC TAAAATGATT GAAATAGCTG ATGTTGCTCA GATGATGAAT GCAGCTAAAA CTCTTGGAGA TATGAGTGAT GAGTTGCTTC TGCACCATGC TCGTGACTGG TCAAGAGGTG TTAAGTTTGC ATCGCCTATA TTTGAGGGTG TAAATGCTGT AGAGTTTGAA AAACTTTTTG CCCTTGCAAA AATGGACACA GATGGTAAAA CAGTTCTTTA TAACGGTTTG ACTGGTGAGA AGATTAAAGA GCGTGTAAAC GTTGGTTACA TGTACATCCT TAAGCTACAT CACTTAGTTG ATGAGAAGAT TCATGCTCGT TCAACTGGAC CATACTCACT TGTTACTCAA CAACCAGTTG GTGGTAAAGC ACTATTTGGT GGACAGAGAT TTGGAGAGAT GGAAGTTTGG GCACTAGAAG CTTATGGGGC TTCAGCAGTT TTAAAAGAGA TGTTAACTAT CAAATCAGAT GATGTTGATG GTCGTGTTCG TGCATATAAA GCTATTACAA AAGGTGAATT AGTTCCAGAA TCTGGGATTC CTGAGACACT ATTCGTATTG ACAAAAGAGT TGCAATCACT TGCTCTTGAT GTAGAAATAT TTGACGAGGT AGAAGATAAT GAGTAA
|
Protein sequence | MLNTLYSGNR LRVDFSKTPQ QIEVPNLLQL QQSSYNKFLM LEEKDRSQSG VETVFQSVFP IHDTQNRLTV EYIDSEVGKP KYTVRECMER GLTYAVSLRM KTRLILWDRD ENTKEKLGVK DIKEQSIFVR DIPLMTERTS FIINGVERVV VNQLHRSPGV IFKEEESTTS GNKLIYTGQI IPDRGSWLYF EYDPKDILYM RINKRRKVPV TIMFRALGYS KQDILKLFYP IQHINIVDNK FLMSFNPNDY SSRLTYDLVD KNGKILLASG KRLSAKKAQN FIDEGLSEVE YPLEVLLDRY LAKPIVDPET GEILFDAMTR IDETKLKKLS EIGVKNFSIA NDLAEGVDGS IINAFNADAD SLKLLKQTED IEDENHLSAI RIYKVMRPGE PVTKEAAKVF VNQLFFDPER YDLTKVGRMK MNHKLGLNIP EYITVLTHED IIESVKYVIK VKNGQGHIDD RDHLGNRRIR SIGELLGNEL HNGLIKMQKA IRDKLSTMSG PMNELMPHDL INSKMITSTI MEFFSGGQLS QFMDQTNPLS EVTHKRRLSA LGEGGLVKER AGFEVRDVHP THYGRICPIE TPEGQNIGLI NTLATYSKVN EHGFIEAPYK VMKEGKVTDE IVYLTATQEE GKKIAAASNK LDKDGQFIDK MVVTRVDGEI LHRPVTECNY ADLSSHMVVG VAASLIPFLE HDDANRALMG ANMQRQAVPL IKHEAPIVGT GVEKLVARDS WECVKARRSG IVEKVDGKHI YVMGDDDGEI YIDYYPLQKN LRTNQNTAFG QKPIVNIGQR VEIGQVIADG PNMDQGELAL GVNAMVAFMP WNGYNFEDAI VISERLIRKD AFTSVHIYEK EVEARELKHG VEEITRDIPN VRDDELSHLD ESGIIKIGTN VTGGMILVGK VSPKGEVKPT PEERLLRAIF GEKAGHVINK SLYCPPSMEG VVVDVKIFTK KGYDKDARTL ELEKEERDYL EREHYDRLLM IDKEEMLRVT KLLTKEPLIN DIKIGNTSYK AGDIINGEDL VEVNRFAMNA IIKSFSEEIQ SEYNKTKNYF QKEKRLFRDE HEEKLNILEK DDILPNGVVK HVKIYIATKR QLKVGDKMAG RHGNKGIVST IVPEVDMPYM EDGRGVDVCL NPLGVPSRMN IGQILEMHLG MAGRELGHQI TKEFESKQKD FIKNLRAKMI EIADVAQMMN AAKTLGDMSD ELLLHHARDW SRGVKFASPI FEGVNAVEFE KLFALAKMDT DGKTVLYNGL TGEKIKERVN VGYMYILKLH HLVDEKIHAR STGPYSLVTQ QPVGGKALFG GQRFGEMEVW ALEAYGASAV LKEMLTIKSD DVDGRVRAYK AITKGELVPE SGIPETLFVL TKELQSLALD VEIFDEVEDN E
|
| |