Gene Strop_3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagStrop_3979 
Symbol 
ID5060460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalinispora tropica CNB-440 
KingdomBacteria 
Replicon accessionNC_009380 
Strand
Start bp4531009 
End bp4531497 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content71% 
IMG OID640476239 
Producthypothetical protein 
Protein accessionYP_001160787 
Protein GI145596490 
COG category[S] Function unknown 
COG ID[COG4244] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGAGCC GACTCAAAGT GTTGGGTCAC CCCCTCCACC CAATGCTGGT GATGTTCCCG 
GTCGCCCTGC TCGCCACCGC CGTGCTCTTC GACGTGGTCG ACACCGTCGG CGGGCCCGAC
TTCCTCGGTG AGGTCGCCTA CTGGAACCTC ACCGTCGGCC TGGTCGGTGG CCTGCTGGCC
GCGGTGGCCG GGACGTTCGA CCTGCTCGCC ATCCCGACCG GCACCAGAGC CAAGCGGGTG
GCGCTCACCC ACGCCGCCGC GAACGTGGCG CTGATCCTGC TCTTCGCCGC GGTCTGGGCG
GTCCGGCTCA ACGCCGATAC CCGGGCCGCC GGCGGCGCGC TCATCGCGAT CGAGATCGTC
GCCTTGGCCA TCCTCGGGAT CAGCGCGTGG CTCGGCGGAG AACTGGTTGA CCGCCTCGGA
GTGGGGGTCG ACCGGGACGC CGACCTGGAC GCGCCCAGCT CCCTGCGGCC CTCGGCAAGC
ACCCAGTGA
 
Protein sequence
MESRLKVLGH PLHPMLVMFP VALLATAVLF DVVDTVGGPD FLGEVAYWNL TVGLVGGLLA 
AVAGTFDLLA IPTGTRAKRV ALTHAAANVA LILLFAAVWA VRLNADTRAA GGALIAIEIV
ALAILGISAW LGGELVDRLG VGVDRDADLD APSSLRPSAS TQ