| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3555 |
|---|
| Symbol | cobD |
|---|
| ID | 5060029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | - |
|---|
| Start bp | 4075081 |
|---|
| End bp | 4076082 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640475809 |
|---|
| Product | cobalamin biosynthesis protein |
|---|
| Protein accession | YP_001160364 |
|---|
| Protein GI | 145596067 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
|---|
| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGGCAGG CGACGGTAGC GGGGCTCGTC GCGGGTTACG CGGTGGACGC GCTGGTCGGC
GACCCTCGCC GATGGCACCC GGTGGCTGGG TTCGGGCGCG CGGCGAGTGC CCTGGAGCGA
CGGATCTACC GACCAGACCG GGCGGCTGGC GCGGCCTACA CCGCGTTGGC GGTGGGAGTG
CCGGTGGTGC TCGGCGCCGC GGTGACAGTC GCCACCCGAG GGCGTCCCGT GGCGCGGGGC
GTTGTTGTAG CGGCCGGCAC CTGGGCCGTG CTCGGCGGGC GTACGTTGCG GCGTGAGGCG
GCGGTGCTGG GTGCAGCGCT GGGCGATGGT GACCTGCCGT CGGCCCGGCA ACGCCTGGGG
CACCTCTGTG GGCGGGATCC GTCAACGCTG GACGAGCCGG AGCTGGCTCG TGCCGCCGTC
GAGTCGGTCG CCGAGAACAC CTCCGACGCC GTCGTCGCGC CGCTGTTCTG GGGTGCGGTC
GCCGGCCTGC CCGGGCTGCT GGGCTACCGG GCGGCAAACA CGCTCGACGC GATGGTCGGC
CACCGCTCGC CCCGGTACGC ACGCTTCGGC ACTCCCGCGG CTCGCCTCGA TGACCTGCTC
AACCTCGCCC CATCCCGGCT GACCGGGCTG CTGACGGTCG CCGTGGCGCC GCTGGCCCAA
GGCGACCGGG AGGGGGCCTG GCGGGTCTGG CGCCGGGACC GGAACGACCA CCCCAGCCCC
AACGCCGGAC AGTGCGAGGC GGCGGTGGCC GGAGCGCTCG GTGTCCGCCT CGGCGGGCGC
AACCTCTATG CCGGCCGGGT CGAGGTGCGT CCGTTCCTCG GCGACGGCCC GCGTCCCGAC
GCGAGACACC TTCCGCGGGT GGCTCGGATC TCTGCTGCCG TGGGGCTCGC CACGCTCGGG
CTCGCCGCGG CGTACCCGCT GACCGCGGGG CGTCTGGTCT CCGCCGTGAG CCGCCGGGCG
CTGAGCAGCG GGCTACGAGC CGTACGCGGG AGGCGGCGAT GA
|
|---|
| Protein sequence | MRQATVAGLV AGYAVDALVG DPRRWHPVAG FGRAASALER RIYRPDRAAG AAYTALAVGV
PVVLGAAVTV ATRGRPVARG VVVAAGTWAV LGGRTLRREA AVLGAALGDG DLPSARQRLG
HLCGRDPSTL DEPELARAAV ESVAENTSDA VVAPLFWGAV AGLPGLLGYR AANTLDAMVG
HRSPRYARFG TPAARLDDLL NLAPSRLTGL LTVAVAPLAQ GDREGAWRVW RRDRNDHPSP
NAGQCEAAVA GALGVRLGGR NLYAGRVEVR PFLGDGPRPD ARHLPRVARI SAAVGLATLG
LAAAYPLTAG RLVSAVSRRA LSSGLRAVRG RRR
|
|---|
| |